PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027158-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 469aa MW: 51634.4 Da PI: 6.7795 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 339 | 386 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT+ E +lvd++ ++G g+W+ I r + Rt+ +++++w+++l WALNUT_00027158-RA 339 WTPSEVIKLVDGISEYGVGRWTDIKRLLFstsAYRTPIDLRDKWRNLL 386 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 330 | 389 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.323 | 331 | 390 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-15 | 333 | 388 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-9 | 335 | 388 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.69E-17 | 337 | 387 | No hit | No description |
Pfam | PF00249 | 1.4E-6 | 339 | 386 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MAVKEDELSV STLEDETIEV EHLFAEPKTE HVSVDGVLSF GDVSLGKCLH IEDFSCGFEY 60 GLTNNGGLDS NTTQEGEDLQ LDVLDGLLDE IDEVDDLDAT NGLSNACECE DFLLDIEFAE 120 NATKLDLGRS KESCLGNSSS ESQSPGLSGS SNGAVGISES SSVTILESEC KNDALNKTAT 180 CKLHGILVSK CGCRPPDEDS IHATSLELTK LDDLNSDKNL LACGISSAGG EKRLRKPTRR 240 YIEEFSDKKL EYMKRGEKYS AGMRRRALTV IPEEKSLGGI SVPAVSQFRA RLGRPKKQKQ 300 VPILEIESDK ELVSSESEDD GVTKKISKKH DRRKHQRMWT PSEVIKLVDG ISEYGVGRWT 360 DIKRLLFSTS AYRTPIDLRD KWRNLLRASG AQKPTKKGVE QKQKHSLRPL PSSLLRRVLE 420 LAKIHPYPRV RISKNLCVGQ VTPAMVPSAS KGTPPSSLGG RAVKRKKYN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018806256.1 | 0.0 | PREDICTED: uncharacterized protein LOC108979921 isoform X1 | ||||
TrEMBL | A0A2I4DGI1 | 0.0 | A0A2I4DGI1_JUGRE; uncharacterized protein LOC108979921 isoform X1 | ||||
STRING | EOY07869 | 1e-140 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 5e-23 | TRF-like 6 |