PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00026880-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12001.3 Da PI: 9.7855 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.4e-09 | 20 | 63 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +++ +a +++ ++ +W +a+ +g g+++++++ ++ WALNUT_00026880-RA 20 TWTPKQNKQFEKALALYDKDtpdRWQNVAKAVG-GKSAEEVRKHY 63 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.4E-8 | 17 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.69E-13 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.295 | 19 | 67 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-5 | 20 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-8 | 20 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-5 | 27 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MASSPFTSSS GSNCSSTSST WTPKQNKQFE KALALYDKDT PDRWQNVAKA VGGKSAEEVR 60 KHYEILVQDL INIESGQVPL PNYKTTGSNS RSGSGDEQIR RMKNLRLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-34 | 21 | 107 | 11 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808667.1 | 3e-76 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 1e-43 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2I4DNF2 | 8e-75 | A0A2I4DNF2_JUGRE; protein RADIALIS-like 6 | ||||
STRING | XP_008220818.1 | 3e-43 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-41 | RAD-like 6 |