PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026868-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 685aa    MW: 75261.7 Da    PI: 6.5859
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026868-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094264631954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  WALNUT_00026868-RA 426 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 463
                         664459******************************88 PP
2BELL126.41e-40288359172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+q+lq k +kLls+ +eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  WALNUT_00026868-RA 288 EKQDLQDKLTKLLSMSDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAITGQI 359
                         6899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-59203357IPR006563POX domain
PfamPF075268.2E-49209356IPR006563POX domain
PROSITE profilePS5007112.163404467IPR001356Homeobox domain
SMARTSM003891.0E-9407471IPR001356Homeobox domain
CDDcd000868.21E-13407468No hitNo description
SuperFamilySSF466892.57E-17408474IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-29410473IPR009057Homeodomain-like
PfamPF059204.7E-18424463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEAFYASSNN QRDTAPMLYV REHLPNSSVL PGNMMMYMNS GSYSDALAGN SQQQNNCMVI  60
PSLGASNSAQ QQQEILSNFG SRIVEHDFNA WRDGRNEMLV THPMGGRSAS ILHGGQNLQG  120
QGLSLSLSTQ IPSGIQMPSI PYRNPNPGFA SILSPSSSVS ADSGDRNGSS RDEQLRNAEY  180
LPHNFPGGNQ DLYKGNLSTL GMSNIVRNIP SSKYLKAAQQ LLDEVVNVRK ALKQPDIAKN  240
DGAHEHQIKS RKEGGGGTKN ETTMPPSGVS SYPHESASNS LCELSNAEKQ DLQDKLTKLL  300
SMSDEVDRRY KQYYHQMQIV VSSFDVIAGC GAAKPYTALA LQTISRHFRC LRDAITGQIR  360
ATRKSLGDQD TSGSSQGVGI SRLRYVDQQL RQQRAIQQLG MMQQHAWRPQ RGLPESSVSI  420
LRAWLFEHFL HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEEIGDA  480
EMDSNSSSEN AAKATKGDNG TSEDRGEDFQ QSASSTATER CSMGQLMDSK PDHVPDVEMA  540
GSVGVANYQS GTHGETEKEY GLMKGREEQR RTMDDCNLFP DAIVHSDAAS ERYMAAAAAY  600
HMSELGRFGG ASGVSLTLGL QHCEGDSLPM SGVTHRSFIS MRGDQIYNAA PSSSVGAETA  660
DFECMNPGNQ QHRFSSSHLL HDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16413470158Homeobox protein Meis1
4xrs_B1e-16413470158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807392.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_018807393.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A2I4DJU20.0A0A2I4DJU2_JUGRE; BEL1-like homeodomain protein 6
STRINGEOX979220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-126BEL1-like homeodomain 6