PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026830-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 431aa MW: 47782.5 Da PI: 5.8843

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026830-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3.1e-32	275	329	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpe+He+Fveav++L G+ekAtPk +l+lm+vkgLt++hvkSHLQkYRl WALNUT_00026830-RA 275 KPRMRWTPEIHECFVEAVDKLDGAEKATPKGVLKLMNVKGLTIYHVKSHLQKYRL 329 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.78E-18	272	329	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.435	272	332	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-31	274	330	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	275	330	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	277	328	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-20	338	382	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MRVGLPSKTM NHNIFISTKE SEATRRVTQS YYATVSPIRN FLTVESEGRC LLASECSSSR 60 PSPFIQTESL SSACTQACTV QPQKYRSESG QNSPLSPGRH DQNSKSTFSR SSLFCTSLYQ 120 SSSSSSETHR QLGNLPFLPH PPSYNQSVVS AADSTKTPLL FSEDMDDQYD EEHSEALVTD 180 FLNLPGDASR VNFANDSLAL TEQMELHFLP DDLHMAITGH GESPRLDEIY ETPPASSKNS 240 KPAIGLTCNR SCLSVLPTLD EESSLPSPGS ATVHKPRMRW TPEIHECFVE AVDKLDGAEK 300 ATPKGVLKLM NVKGLTIYHV KSHLQKYRLA KYMPEKNEEA LRMQVEVQKQ LHEQLEVQRD 360 LQLRMEEHAR YLQKILEEQQ KAGIALISPQ TMSSLTNTCQ DSELWPSSVS AGSSPPLPAE 420 SKTDSTSPLS S

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MRVGLPSKTM NHNIFISTKE SEATRRVTQS YYATVSPIRN FLTVESEGRC LLASECSSSR  60
PSPFIQTESL SSACTQACTV QPQKYRSESG QNSPLSPGRH DQNSKSTFSR SSLFCTSLYQ  120
SSSSSSETHR QLGNLPFLPH PPSYNQSVVS AADSTKTPLL FSEDMDDQYD EEHSEALVTD  180
FLNLPGDASR VNFANDSLAL TEQMELHFLP DDLHMAITGH GESPRLDEIY ETPPASSKNS  240
KPAIGLTCNR SCLSVLPTLD EESSLPSPGS ATVHKPRMRW TPEIHECFVE AVDKLDGAEK  300
ATPKGVLKLM NVKGLTIYHV KSHLQKYRLA KYMPEKNEEA LRMQVEVQKQ LHEQLEVQRD  360
LQLRMEEHAR YLQKILEEQQ KAGIALISPQ TMSSLTNTCQ DSELWPSSVS AGSSPPLPAE  420
SKTDSTSPLS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811361.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_018811362.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	1e-112	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A2I4DW36	0.0	A0A2I4DW36_JUGRE; myb family transcription factor PHL6-like
STRING	XP_002513291.1	1e-163	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-106	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]