PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026739-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 202aa MW: 23186.6 Da PI: 5.6564

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026739-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.6	5.7e-33	46	96	2	52
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvG 52 +++ lkcprCds+ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPv WALNUT_00026739-RA 46 QSEPLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVA 96 57889********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-20	47	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-30	49	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.322	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGLSSRQVSG DGLDWSQAFL QDQTTLELPK TPPIMRRQQQ QNQQQQSEPL KCPRCDSSNT 60 KFCYYNNYNK SQPRHFCRAC KRHWTKGGTL RNVPVAPHLP LDQNLNFPFS SSSSFNTNPS 120 PIPTSFQSSD VYYNYTDQEF KTMGEPTITN IMANPSSTAT QPWQIPTTTS GMDMSTYWTW 180 DDIDTFASTD LNLQWDDFEI KP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807309.1	4e-57	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A2I4DJI3	8e-56	A0A2I4DJI3_JUGRE; dof zinc finger protein DOF1.4-like
STRING	XP_008439887.1	1e-50	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	5e-27	Dof family protein