PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026721-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 316aa    MW: 34480.2 Da    PI: 7.9933
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026721-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.12.4e-3462118358
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          v+YkeClkNhAaslG+ha+DGCgEfmps++++  ++++lkCaACgCHRnFHRre++
  WALNUT_00026721-RA  62 VVTYKECLKNHAASLGSHALDGCGEFMPSPSATsVDPTSLKCAACGCHRNFHRREPD 118
                         589***************************999899******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2863117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2263116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.1E-3164116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.52265116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.83E-19188260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-29193260IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-25199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDITPTIATT TNNTISAIKS PEADTETPTR IQPSKPLSFS NGVLKRHNPH HHHHHLAPPQ  60
LVVTYKECLK NHAASLGSHA LDGCGEFMPS PSATSVDPTS LKCAACGCHR NFHRREPDDP  120
ILTTHVIEYQ PHHRHHPPPP PPLPASNRSP NSASPPPISS SYYPSAPHML LALSGGLSAP  180
PESAAGPTNT MVTPSPNARK RFRTKFSHEQ KEKMLQFAQR VGWKMQKSDE ELVQEFCNEV  240
GVEKGVLKVW MHNNKNTFGR RDVNGTGGNS NNILEQTHNN GNDDDNKETN NLGENPNHYR  300
SDSGTHGAAN GSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-232002571875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812239.10.0PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9LXG08e-82ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2I4DYL30.0A0A2I4DYL3_JUGRE; zinc-finger homeodomain protein 10-like
STRINGVIT_14s0108g00750.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-75homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]