PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026549-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 338aa    MW: 37343.6 Da    PI: 7.8207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026549-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08246286954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P  +      K++ a++L +A +Y+k L
  WALNUT_00026549-RA 246 ARQRRERISERIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 286
                         69******************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.015237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14243303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-12245300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5246286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-4259291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNPSSGLNAD FSMAKQSQEV NGLQNGRPPV PTCSLESLDC LLSATTSNTD TSAEDEGIST  60
IFSDCRNLWN FGSIGAVSSG ECENDASNAI KEDMRCPVNE IEKRASQSSS DLYGNHGKFR  120
ESKHVSTKRS NHDQSEIKAG PNYSFDLLQT DSTTREGGFK LISENPAKPK KPRSEKGPST  180
SNINFQQSSS SVSSSVEEPD PEAIAQMKEM IYRAAAFRPV NLGLDVVEKP KRKNVRISSD  240
PQTVAARQRR ERISERIRVL QRLVPGGNKM DTASMLDEAA NYLKFLRSQV KALENLGQKL  300
DSMNCPPADL AFSFNPSFPM QTYFPLQNPN HIHRYPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808805.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH87-like
SwissprotQ8S3D25e-92BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A2I4DNT40.0A0A2I4DNT4_JUGRE; LOW QUALITY PROTEIN: transcription factor bHLH87-like
STRINGVIT_09s0002g02700.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]