PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026408-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SBP

Protein Properties

Length: 1003aa MW: 111627 Da PI: 5.7962

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026408-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.8	1.8e-39	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adls+ak+yhrrh+vCe+hska+++lv + +qrfCqqCsrf el+efDe+krsCrrrLa+hn+rrrk+++ WALNUT_00026408-RA 154 ICQVDHCGADLSHAKDYHRRHRVCEMHSKATKALVGNSMQRFCQQCSRFQELQEFDEGKRSCRRRLAGHNKRRRKTNP 231 5**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.0E-32	148	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.094	152	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-36	153	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-29	155	228	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.8E-6	749	905	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.7E-7	780	889	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.27E-6	781	889	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MEAGFGGEAH HFYAMSAADL RVMGKRSLEW DLNEWKWDGD LFMASQLNPV PSGCMDQQFL 60 PLGSGIPLTG GSSNSSSSCS DEVNLEVERG KRELEKRRRV IVLEDDNSND EEEGTLALKL 120 GGQDYQVAER EARNWEGMDG KKTKLVGGTS NRAICQVDHC GADLSHAKDY HRRHRVCEMH 180 SKATKALVGN SMQRFCQQCS RFQELQEFDE GKRSCRRRLA GHNKRRRKTN PDTVVNGSTM 240 NDDQTSGYIL ISLLKILSNM HSNRSDQATD QDLLSHFLRS LASQTGEQVG KNISGILKEA 300 PNSQNAGNSL GNSELVSTLF TNGPHDPSRT FKDHHPVPVT EMPQQGLRVD EARGGDIQTA 360 SSSKPSILSS PPVYSEVRDS TARQIKMNNF DLNDIYIDSD DGMEDIDRLP DPANMGASSL 420 DSHQSSPPQT SGHSDSVSAQ SPTSSSGDAQ SRTDRIVFKL FGKEPNDFPL VLRAQILDWL 480 SHSPTDIESY IRPGCIILTI YLCQSEAAWE ELCHDLSSSL NRLLDVSDDS FWRTGWVYIR 540 VQHQIAFIYN GQVVIDTSLP IRSNNYGQIL SVKPIAISTS ERAQFSVKGI NLTRPATRLL 600 CALEGNCQVE ENTHDSTDAL DNFEDHDELQ SINFSCSIHA VNGRGFIEIE DHGFSSSFFP 660 FIVAEEDVCS EIRALESALE STETSADFVG TRKMEAKNQA LDFIHEMGWL LHRSQLKSRL 720 GRMDPNEDLF PLKRFKWLME FSMDQDWCAV VRKLLDILLD GTVGAGEHPS MNLALAEMGL 780 LHRAVRRNSR ALVELLLRYQ VSNELRSESV ELFGGGNESF LFRPDVLGPA GLTPLHIAAG 840 KDGSENVLDA LTNDLKMVGI EAWKSARDST GSTPEDYARL RGHFSYIHLV QRKINKRSAA 900 GHVVLDIPSA PSDCNANQKQ SNELTTSFEI GAESRRVRQH CKLCDQKLAY GTACRSLVYR 960 PVMLSLVTIA VVCVCVALLF KSSPEVLYVF RPFRWEMLGY GTS

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MEAGFGGEAH HFYAMSAADL RVMGKRSLEW DLNEWKWDGD LFMASQLNPV PSGCMDQQFL  60
PLGSGIPLTG GSSNSSSSCS DEVNLEVERG KRELEKRRRV IVLEDDNSND EEEGTLALKL  120
GGQDYQVAER EARNWEGMDG KKTKLVGGTS NRAICQVDHC GADLSHAKDY HRRHRVCEMH  180
SKATKALVGN SMQRFCQQCS RFQELQEFDE GKRSCRRRLA GHNKRRRKTN PDTVVNGSTM  240
NDDQTSGYIL ISLLKILSNM HSNRSDQATD QDLLSHFLRS LASQTGEQVG KNISGILKEA  300
PNSQNAGNSL GNSELVSTLF TNGPHDPSRT FKDHHPVPVT EMPQQGLRVD EARGGDIQTA  360
SSSKPSILSS PPVYSEVRDS TARQIKMNNF DLNDIYIDSD DGMEDIDRLP DPANMGASSL  420
DSHQSSPPQT SGHSDSVSAQ SPTSSSGDAQ SRTDRIVFKL FGKEPNDFPL VLRAQILDWL  480
SHSPTDIESY IRPGCIILTI YLCQSEAAWE ELCHDLSSSL NRLLDVSDDS FWRTGWVYIR  540
VQHQIAFIYN GQVVIDTSLP IRSNNYGQIL SVKPIAISTS ERAQFSVKGI NLTRPATRLL  600
CALEGNCQVE ENTHDSTDAL DNFEDHDELQ SINFSCSIHA VNGRGFIEIE DHGFSSSFFP  660
FIVAEEDVCS EIRALESALE STETSADFVG TRKMEAKNQA LDFIHEMGWL LHRSQLKSRL  720
GRMDPNEDLF PLKRFKWLME FSMDQDWCAV VRKLLDILLD GTVGAGEHPS MNLALAEMGL  780
LHRAVRRNSR ALVELLLRYQ VSNELRSESV ELFGGGNESF LFRPDVLGPA GLTPLHIAAG  840
KDGSENVLDA LTNDLKMVGI EAWKSARDST GSTPEDYARL RGHFSYIHLV QRKINKRSAA  900
GHVVLDIPSA PSDCNANQKQ SNELTTSFEI GAESRRVRQH CKLCDQKLAY GTACRSLVYR  960
PVMLSLVTIA VVCVCVALLF KSSPEVLYVF RPFRWEMLGY GTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	148	228	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018832330.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2I4FL14	0.0	A0A2I4FL14_JUGRE; squamosa promoter-binding-like protein 1 isoform X2
STRING	POPTR_0002s18970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]