PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026329-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRF

Protein Properties

Length: 604aa MW: 64856.3 Da PI: 8.4037

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026329-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	217	261	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e WALNUT_00026329-RA 217 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 261 79****************************************985 PP
2	QLQ	62.6	1e-21	147	183	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k WALNUT_00026329-RA 147 GPFTPSQWMELEHQALIYKYITANMPVPSNLLIPIRK 183 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.6E-13	147	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.317	148	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.2E-16	148	182	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	217	261	IPR014977	WRC domain
Pfam	PF08879	7.2E-21	218	260	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MDFGVVGFDG LMGSDNGFSS LASDPETKQK WYGAGFLKQQ RSGTSEDDWR SSKLVKTDDY 60 SASKAVLLHQ KNALLRSNCT LFSDGQQQQQ MLSFSSPKSE VLVEKNFQNA PLHNFHHALS 120 AYSRNTGYSS GSLDGASAHG VLAGSRGPFT PSQWMELEHQ ALIYKYITAN MPVPSNLLIP 180 IRKALDSAGF SSFPGGLLRA NTLGWSSFHL GFSNNTDPEP GRCRRTDGKK WRCSRDAVAD 240 QKYCERHMNR GRHRSRKPVE GQIGHAITGT TTPSTNSKLM PIASSPSASA AVVTSGGGAA 300 NGLTSAHQQL KNLQHDVSGP SVASTINRMF INKDNMGERM QGQPGLSMLS PSIDLKPKEN 360 SFMIQKQQIS YEEPSRNVFG LVTSDSLLNP SHRSSSLVNC SSQEVSDGGT DSQQALRHFI 420 DDWPKSQCDR SAISWPEIGM QPDRTQLSIS IPLASPGFVS STSSPTGEKL TLSPLRLSRE 480 LDSVRMGLGV GSVLNETSPR QANWIPISWE ASMGGPLGEV LHHSNGANEC KNPSALNLMT 540 GGWDNGPPIG SSPTGVLQKT TFGSLSNSSA GSSPRAENHK TLEGASQCND LLGSTLNSSS 600 LPAV

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MDFGVVGFDG LMGSDNGFSS LASDPETKQK WYGAGFLKQQ RSGTSEDDWR SSKLVKTDDY  60
SASKAVLLHQ KNALLRSNCT LFSDGQQQQQ MLSFSSPKSE VLVEKNFQNA PLHNFHHALS  120
AYSRNTGYSS GSLDGASAHG VLAGSRGPFT PSQWMELEHQ ALIYKYITAN MPVPSNLLIP  180
IRKALDSAGF SSFPGGLLRA NTLGWSSFHL GFSNNTDPEP GRCRRTDGKK WRCSRDAVAD  240
QKYCERHMNR GRHRSRKPVE GQIGHAITGT TTPSTNSKLM PIASSPSASA AVVTSGGGAA  300
NGLTSAHQQL KNLQHDVSGP SVASTINRMF INKDNMGERM QGQPGLSMLS PSIDLKPKEN  360
SFMIQKQQIS YEEPSRNVFG LVTSDSLLNP SHRSSSLVNC SSQEVSDGGT DSQQALRHFI  420
DDWPKSQCDR SAISWPEIGM QPDRTQLSIS IPLASPGFVS STSSPTGEKL TLSPLRLSRE  480
LDSVRMGLGV GSVLNETSPR QANWIPISWE ASMGGPLGEV LHHSNGANEC KNPSALNLMT  540
GGWDNGPPIG SSPTGVLQKT TFGSLSNSSA GSSPRAENHK TLEGASQCND LLGSTLNSSS  600
LPAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473368	7e-61	AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018859460.1	0.0	PREDICTED: growth-regulating factor 6-like isoform X2
Swissprot	Q6AWY3	1e-114	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2I4HTI1	0.0	A0A2I4HTI1_JUGRE; growth-regulating factor 6-like isoform X2
STRING	EOY15657	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-104	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]