PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026319-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 467aa    MW: 50930.5 Da    PI: 7.5171
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026319-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.46e-32253308156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  WALNUT_00026319-RA 253 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 308
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.204250310IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-28251311IPR009057Homeodomain-like
SuperFamilySSF466891.88E-16251311IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26253308IPR006447Myb domain, plants
PfamPF002498.2E-7255306IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFGDQIDQT QKIEDFLSRL EEERLKIDAF KRELPLCMQL  60
LTNAVEAHRQ QLQAYRGNQG PRPVLEEFIP LKQSTSESSE KSSNNSDKAN WMTSAQLWSQ  120
ASDGTKSQSA INISPKEPDI GFSVSPKLAF DGKQRNGGAF HPFSKERNSC PSPTLRDLPD  180
LALASADQKE LEDKKCLETE NGISCPRRDQ NIIGKGGNGG VVVEQGKGPG GNSSDGQTTV  240
TTTAPNTSQS HRKARRCWSP DLHRRFVNAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS  300
HLQKYRLHTR RPSPSPQASG APAPQLVVLG GIWVPPEYAT AAAAHTGASA LYGTHPGSHA  360
PPHYCGPAVP QEFYAAPPPP HPPHHQLHHH ALHHQVHVYK ATPQTNSSPE SDIRGTRDRS  420
ESIEDGKSES SSWNKGESGE NGGERKGFAT MREDGEESNG SGITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-14253306154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-14253306154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-14253306154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-14253306154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836930.10.0PREDICTED: myb family transcription factor EFM-like isoform X1
SwissprotQ9ZQ851e-130EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2I4FZ520.0A0A2I4FZ52_JUGRE; myb family transcription factor EFM-like isoform X1
STRINGVIT_11s0016g04600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-113G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]