PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026222-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 393aa MW: 45136.3 Da PI: 4.4432

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026222-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.3	6.3e-16	158	243	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ +L++a ++ + +r++l+ W+ev++k++e + er+ +qC+++++ l+k++kk+k+++ + t ++ss+++yf++++ WALNUT_00026222-RA 158 EWTERETFVLLDAWVDRFLQRGRKSLRSEEWQEVAEKVSEIsKTERTDTQCRNRLDTLKKKFKKEKTRMAE-TGDASSKWVYFKKMD 243 5***********************************886267**********************9.689999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.3E-20	158	245	No hit	No description
PROSITE profile	PS50090	6.33	159	216	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	174	226	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDETEDDARY SPNPYGVNHQ QDYGTSSQQK NSVRNAPHSR PAVNHYVDVD DEESGEEEEE 60 NDDQSNGFRN MQQDLEDDEE EEGEESDDEE DDDDDKQKSY GRRTEYADLK RHPKKRKLKS 120 LASSYEFAPR VPVPSTAATA PMPLAPKPSV VGRNSLTEWT ERETFVLLDA WVDRFLQRGR 180 KSLRSEEWQE VAEKVSEISK TERTDTQCRN RLDTLKKKFK KEKTRMAETG DASSKWVYFK 240 KMDMMLSSPP QQAGLSCGLD SGEYVFMNPR VYLNHANGLE EMRDSPGNSE SLDGEEDASD 300 GLPPKKRRTG RVNDEGPSFS LLADSINKFS EIYEKIENSK RQQMVELEKM RMDFHREMEM 360 QKTQVLERVQ AEIAKIQQGD EEENDVSAEN PSG

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDETEDDARY SPNPYGVNHQ QDYGTSSQQK NSVRNAPHSR PAVNHYVDVD DEESGEEEEE  60
NDDQSNGFRN MQQDLEDDEE EEGEESDDEE DDDDDKQKSY GRRTEYADLK RHPKKRKLKS  120
LASSYEFAPR VPVPSTAATA PMPLAPKPSV VGRNSLTEWT ERETFVLLDA WVDRFLQRGR  180
KSLRSEEWQE VAEKVSEISK TERTDTQCRN RLDTLKKKFK KEKTRMAETG DASSKWVYFK  240
KMDMMLSSPP QQAGLSCGLD SGEYVFMNPR VYLNHANGLE EMRDSPGNSE SLDGEEDASD  300
GLPPKKRRTG RVNDEGPSFS LLADSINKFS EIYEKIENSK RQQMVELEKM RMDFHREMEM  360
QKTQVLERVQ AEIAKIQQGD EEENDVSAEN PSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	116	LKRHPKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812519.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A2I4DZE4	0.0	A0A2I4DZE4_JUGRE; trihelix transcription factor ASIL1-like
STRING	EOY26726	1e-176	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-72	Trihelix family protein