PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026186-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 305aa    MW: 34441.6 Da    PI: 9.6745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026186-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1398148154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +r++h ++Er+RR+++N+ +  Lr+l+P++   ++++ + a+i+  A+e++k L
  WALNUT_00026186-RA  98 QRMTHIAVERNRRKQMNEHLVVLRSLMPES---YAQRGDQASIVGGAIEFVKVL 148
                         79****************************...*****************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1696162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-1196153No hitNo description
PROSITE profilePS5088814.88897148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1198148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1398159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALEALSSNE LFNYIIYDTI SATPYSSHDS SETGVLLESV MMPRNQGGIL ENSSLMTQKR  60
HSGRSDVVQR RQLLAVQGRK KRRRKPRVCK NKEEAETQRM THIAVERNRR KQMNEHLVVL  120
RSLMPESYAQ RGDQASIVGG AIEFVKVLEH LLQSLEAQKL QRPQPGVVES GLNEDMTTTP  180
KFLKQQRPPF AQFFAYPQYT WSQIPNKYAS KTKAAIADIE VTLIETHASL RILSRRSPRQ  240
LSKLVAGFQT LCLSILHLNV TTMDPLVLYS ISAKVEEGCR LTSVDDIAGA VHHMLRIIED  300
EAALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RKKRRRK
27885RKKRRRKP
37984KKRRRK
498109RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812455.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR01e-75BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A2I4DZ790.0A0A2I4DZ79_JUGRE; transcription factor bHLH71-like
STRINGcassava4.1_012613m1e-154(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-73beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]