PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026182-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 392aa    MW: 42226.4 Da    PI: 6.9232
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026182-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-0888112126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f++ GtC+y   C+FaH+
  WALNUT_00026182-RA  88 FKTKLCCKFRA-GTCPYITDCNFAHS 112
                         69*********.*************8 PP
2zf-CCCH17.95.5e-06165188326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + C+ f+    C+yGd+C+F H+
  WALNUT_00026182-RA 165 GRHCKKFYTEEGCPYGDSCTFLHD 188
                         5669*****9*************7 PP
3zf-CCCH42.11.4e-13243268126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  WALNUT_00026182-RA 243 WKTRICNKWELTGYCPFGSKCHFAHG 268
                         8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-1385120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-785118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54987114IPR000571Zinc finger, CCCH-type
SMARTSM003560.005587113IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-588112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-8161190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7162190IPR000571Zinc finger, CCCH-type
SMARTSM003560.24162189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704162190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-15237269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9240268IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422242270IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-11243268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDFSGGNVVQ VITGSGPDSW SGGDHGMWAT DDDYRAWNNG DDTPSSNSNY ELRLSQSRSG  60
SEPSHKRSRN SQDVNSSNRS KAIGKMFFKT KLCCKFRAGT CPYITDCNFA HSIEELRRPP  120
PNWQEIVAAH EEEKAVVSSE PMEEYQIPSL GSSNFVGETQ RSFKGRHCKK FYTEEGCPYG  180
DSCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGGGSNGS GSSNGGGASA GGASGQNAKP  240
SNWKTRICNK WELTGYCPFG SKCHFAHGAA GMSCFLYSTP VRMEIFVPSL TLESMCLTTE  300
LHRYGGGLVE GDTRDSSSAP PDSKQSGVPS KNPADTQVAS VPSVPHSDVY HMGVTSQRSP  360
IVSQRPGQRT HQKWKGPDKI SRIYGDWIDD IE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812459.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-127C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2I4DZ760.0A0A2I4DZ76_JUGRE; zinc finger CCCH domain-containing protein 12-like
STRINGXP_010096556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-128C3H family protein