PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00026167-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ZF-HD | ||||||||
Protein Properties | Length: 248aa MW: 27109 Da PI: 7.4818 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.4e-32 | 49 | 105 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rY+eClkNhA+s+GghavDGCgEf+++ g+egt +alkCaAC+CHRnFHR+e++ WALNUT_00026167-RA 49 TTIRYRECLKNHAVSIGGHAVDGCGEFLAA-GDEGTLDALKCAACNCHRNFHRKETNG 105 579**************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-23 | 32 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.2E-30 | 51 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.9E-29 | 52 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.155 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.86E-21 | 172 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-32 | 173 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-25 | 185 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEFDEHEEQE EDMMEIPTPP PGYESVSNSA RPKMGSSVGE EIRTGGGNTT IRYRECLKNH 60 AVSIGGHAVD GCGEFLAAGD EGTLDALKCA ACNCHRNFHR KETNGSSEAV LYHHHHQISP 120 YYRTSAPPPP QTGYHLRLTT PSQHHRHPLA LPAASGGGGG AHSREGEDMS NPSSSGGGGG 180 SSGSKKRFRT KFTQEQREKM LAFAESLGWR IQKHDEAAVE QFCADTGVRR NVLKVWMHNN 240 KHTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-29 | 184 | 243 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808844.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 3e-75 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2I4DNX2 | 0.0 | A0A2I4DNX2_JUGRE; zinc-finger homeodomain protein 2 | ||||
STRING | XP_010272957.1 | 1e-98 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-69 | homeobox protein 22 |
Publications ? help Back to Top | |||
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