PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026167-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 248aa    MW: 27109 Da    PI: 7.4818
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026167-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.4e-3249105259
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         +++rY+eClkNhA+s+GghavDGCgEf+++ g+egt +alkCaAC+CHRnFHR+e++ 
  WALNUT_00026167-RA  49 TTIRYRECLKNHAVSIGGHAVDGCGEFLAA-GDEGTLDALKCAACNCHRNFHRKETNG 105
                         579**************************9.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2332103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-3051103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.9E-2952102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.15553102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.86E-21172246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-32173247IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-25185241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEFDEHEEQE EDMMEIPTPP PGYESVSNSA RPKMGSSVGE EIRTGGGNTT IRYRECLKNH  60
AVSIGGHAVD GCGEFLAAGD EGTLDALKCA ACNCHRNFHR KETNGSSEAV LYHHHHQISP  120
YYRTSAPPPP QTGYHLRLTT PSQHHRHPLA LPAASGGGGG AHSREGEDMS NPSSSGGGGG  180
SSGSKKRFRT KFTQEQREKM LAFAESLGWR IQKHDEAAVE QFCADTGVRR NVLKVWMHNN  240
KHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-291842431675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808844.10.0PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB613e-75ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2I4DNX20.0A0A2I4DNX2_JUGRE; zinc-finger homeodomain protein 2
STRINGXP_010272957.11e-98(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-69homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]