PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026056-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 454aa MW: 49208.8 Da PI: 6.4105

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026056-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.6e-37	93	153	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCy+nny+++qPryfCk+C+ryWt+GG++r vPvG+grrknk+s+ WALNUT_00026056-RA 93 PNKVLPCPRCNSSETKFCYFNNYNVNQPRYFCKNCQRYWTAGGTIRSVPVGAGRRKNKHST 153 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	93	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-31	95	151	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.276	97	151	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	99	135	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MRILALAISV IYWSVQLYVQ LQYGCEEATI TEVDDPFMAT SCEQDCPSEL DTQKEIDNQN 60 PTQENEAKVE RNSEQDQIGK GGAGGQAKAL KKPNKVLPCP RCNSSETKFC YFNNYNVNQP 120 RYFCKNCQRY WTAGGTIRSV PVGAGRRKNK HSTSPHQQVV EPSNVLPVIK TDSLSSVSNQ 180 HPSCAGLEFG KDAPLCESMT NVLNLRDQKK NVGIGPSASE DSSDEPLPSG SSLAAAAPQD 240 CEFPEKEIMQ VGLPGHCNSF IPTHGLQCYP VSQCAYHWNP GWNAMVFGSS SSISNNGHMG 300 SPPMVPVPGF CAPTFSFLPA PYWGCMRSWD ASLVGSTGSP SASSSTSNGS CSGNSSPTLG 360 KHSRDANPQA EETKERSLWV PKTLRIDDPE EAAKSSIWST LGIKPEKDKP SIRDSIFKAS 420 QSKSDTSSRT SDADHVLKAN PAAFSRCQSF QEST

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MRILALAISV IYWSVQLYVQ LQYGCEEATI TEVDDPFMAT SCEQDCPSEL DTQKEIDNQN  60
PTQENEAKVE RNSEQDQIGK GGAGGQAKAL KKPNKVLPCP RCNSSETKFC YFNNYNVNQP  120
RYFCKNCQRY WTAGGTIRSV PVGAGRRKNK HSTSPHQQVV EPSNVLPVIK TDSLSSVSNQ  180
HPSCAGLEFG KDAPLCESMT NVLNLRDQKK NVGIGPSASE DSSDEPLPSG SSLAAAAPQD  240
CEFPEKEIMQ VGLPGHCNSF IPTHGLQCYP VSQCAYHWNP GWNAMVFGSS SSISNNGHMG  300
SPPMVPVPGF CAPTFSFLPA PYWGCMRSWD ASLVGSTGSP SASSSTSNGS CSGNSSPTLG  360
KHSRDANPQA EETKERSLWV PKTLRIDDPE EAAKSSIWST LGIKPEKDKP SIRDSIFKAS  420
QSKSDTSSRT SDADHVLKAN PAAFSRCQSF QEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843505.1	0.0	PREDICTED: cyclic dof factor 2-like isoform X1
TrEMBL	A0A2I4GHY0	0.0	A0A2I4GHY0_JUGRE; cyclic dof factor 2-like isoform X1
STRING	XP_010266732.1	1e-130	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-39	cycling DOF factor 2