PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00025989-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10280.3 Da PI: 6.8794 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.9e-09 | 12 | 60 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 ++W++ + + + +a + + ++ +W +a+ +g g+t++++k r+q +l WALNUT_00025989-RA 12 DSWSAKDNKAFERALAVYDKDtpdRWYNVAKAVG-GKTEEEVKRRYQELL 60 58********************************.************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.758 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 7.9E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 13 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-7 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-5 | 20 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASSSMSSQS SDSWSAKDNK AFERALAVYD KDTPDRWYNV AKAVGGKTEE EVKRRYQELL 60 EDVQRIESGR VPFPKYKTTG QGNMPDEDKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-35 | 1 | 90 | 1 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857586.1 | 5e-61 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 8e-35 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2I4HN48 | 1e-59 | A0A2I4HN48_JUGRE; protein RADIALIS-like 1 | ||||
STRING | evm.model.supercontig_62.157 | 5e-44 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 9e-32 | RAD-like 1 |
Publications ? help Back to Top | |||
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