PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025987-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 438aa    MW: 47937.8 Da    PI: 5.8116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025987-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10247294455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00025987-RA 247 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 294
                         8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.93E-10241298No hitNo description
SuperFamilySSF474596.54E-17241312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17243310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNRALPEMSH CLNGPGNCTD MNVLERQRAR MRWQQSYFGG CDSGGVFLEP SQANQVGNFQ  60
DLVVGGGGCS VLDDVVTHSV KPDPGLENGW LELGRLELPK LGFGSGGSMN GSPTGLEMNS  120
SISKTSSCPP TEAQSAPEAK GKVSVPAEKM SSAAGRDSSK KRKADKMQNT KVFAEDNAKD  180
KRSKACAEEG ESKINTEQAR TKNNTSTPTT NNRETSADSS KENSKASEVQ KPDYIHVRAR  240
RGQATDSHSL AERVRREKIS ERMKYLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL  300
SMKLAAVNPR LDFNIDDFFA KETIPACSAD FPTIGLSSEM TNPAYLQFNP VQQVVACCGF  360
EMGLNSPDMA LRRSLSAPVS LPEPYLDASC FTQLQPPPTW DADLQNLLNL EFHQERSISF  420
PYQPFTGSIE ASNLKMEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818185.10.0PREDICTED: transcription factor bHLH63-like
RefseqXP_018857591.10.0PREDICTED: transcription factor bHLH63-like
RefseqXP_018858813.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLA0A2I4EFM10.0A0A2I4EFM1_JUGRE; transcription factor bHLH63-like
STRINGXP_010088933.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.18e-68cryptochrome-interacting basic-helix-loop-helix 1