PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00025834-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 376aa MW: 42791.1 Da PI: 8.2009

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00025834-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.4e-54	33	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++kv++ +++ ++++ vd++k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke WALNUT_00025834-RA 33 LPPGFRFHPTDEELVTYYLNRKVSDVNFTS-KAMAVVDLNKCEPWDLPGKATMGEKEWYFFNLRDRKYPTGLRTNRATAAGYWKTTGKDKE 122 79***********************999.88***********888899********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g lvg+kktLvfykgrapkgek++Wvmheyr WALNUT_00025834-RA 123 IFR-AGMLVGMKKTLVFYKGRAPKGEKSNWVMHEYRQ 158 .999***************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-63	22	183	IPR003441	NAC domain
PROSITE profile	PS51005	59.009	33	183	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	34	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MLAKGTLAHH YKKTPLAASL VMKMEERQQQ QQLPPGFRFH PTDEELVTYY LNRKVSDVNF 60 TSKAMAVVDL NKCEPWDLPG KATMGEKEWY FFNLRDRKYP TGLRTNRATA AGYWKTTGKD 120 KEIFRAGMLV GMKKTLVFYK GRAPKGEKSN WVMHEYRQEN NHNIPPLIKS TKDEWVVCRV 180 FQKNVVKKPQ QTPTLSSQAP SDDLDSPCDT NSNIVNEFGD IEMPNLNSFH ANSCNGFNNI 240 SPQSCYYSDN NINVNMMNMN WAATRDHDDH QVATTDLSSS LSAWPSSLQL SSGLSMNSLL 300 LKALQLRSYQ QREATKTHDY SYMMPQGQGF SQFGSWDHDS STSTTPNLQA SSSSKGLESV 360 LQQQQYSEQL LMDSIW

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MLAKGTLAHH YKKTPLAASL VMKMEERQQQ QQLPPGFRFH PTDEELVTYY LNRKVSDVNF  60
TSKAMAVVDL NKCEPWDLPG KATMGEKEWY FFNLRDRKYP TGLRTNRATA AGYWKTTGKD  120
KEIFRAGMLV GMKKTLVFYK GRAPKGEKSN WVMHEYRQEN NHNIPPLIKS TKDEWVVCRV  180
FQKNVVKKPQ QTPTLSSQAP SDDLDSPCDT NSNIVNEFGD IEMPNLNSFH ANSCNGFNNI  240
SPQSCYYSDN NINVNMMNMN WAATRDHDDH QVATTDLSSS LSAWPSSLQL SSGLSMNSLL  300
LKALQLRSYQ QREATKTHDY SYMMPQGQGF SQFGSWDHDS STSTTPNLQA SSSSKGLESV  360
LQQQQYSEQL LMDSIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-56	30	183	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-56	30	183	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-56	30	183	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-56	30	183	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-56	30	183	17	168	NAC domain-containing protein 19
3swm_B	8e-56	30	183	17	168	NAC domain-containing protein 19
3swm_C	8e-56	30	183	17	168	NAC domain-containing protein 19
3swm_D	8e-56	30	183	17	168	NAC domain-containing protein 19
3swp_A	8e-56	30	183	17	168	NAC domain-containing protein 19
3swp_B	8e-56	30	183	17	168	NAC domain-containing protein 19
3swp_C	8e-56	30	183	17	168	NAC domain-containing protein 19
3swp_D	8e-56	30	183	17	168	NAC domain-containing protein 19
4dul_A	7e-56	30	183	14	165	NAC domain-containing protein 19
4dul_B	7e-56	30	183	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018810940.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	5e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I4DUW4	0.0	A0A2I4DUW4_JUGRE; NAC domain-containing protein 92-like
STRING	POPTR_0015s03700.1	1e-142	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	3e-99	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]