PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025828-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 490aa    MW: 54443.9 Da    PI: 5.1933
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025828-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12157179426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G++CkF+H+
  WALNUT_00025828-RA 157 EDCAFYLKTGTCKFGSNCKFNHP 179
                         78********************9 PP
2zf-CCCH24.74e-08202225225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         ++ +C++++ +G CkyG+ C+++H
  WALNUT_00025828-RA 202 GQTECKYYLSSGGCKYGNACRYNH 225
                         6789******************** PP
3zf-CCCH42.79e-14249272326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C++++rtG CkyG++CkF+H+
  WALNUT_00025828-RA 249 EKECPYYMRTGSCKYGANCKFNHP 272
                         689********************9 PP
4zf-CCCH261.6e-08382408127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++C+++H++
  WALNUT_00025828-RA 382 PGQPECSYFLKTGDCKFKSNCRYHHPK 408
                         5789*********************96 PP
5zf-CCCH35.81.4e-11430453326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C +++r+G+CkyG+ CkF H+
  WALNUT_00025828-RA 430 QNICAYYSRYGICKYGPACKFDHP 453
                         679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.37E-7151181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455153181IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5153180IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10157179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5159178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826200228IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-4200227IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6202225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5204228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4206227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7245273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014246274IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6246273IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11249272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6252271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568381409IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4381408IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-6383408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5385410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6425453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596427455IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5427454IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9430453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4432453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEASESIYVP DSSNKDAESG FQSSLSPNPD LDHAPSDPNH TPEEVTLVTL GKLQQLNLKD  60
ISEPFPKEEA EKHGNSDFKE AQEGQEDEKR KGDSNWEEEK GGESECNGWD NNGSENEIEI  120
DKFVVAEGDE VEDTGERNGI TVTEMIQYQY PVRLEAEDCA FYLKTGTCKF GSNCKFNHPV  180
RRNNQAVREK VKEREEPSEK PGQTECKYYL SSGGCKYGNA CRYNHTRGNT SGTTLLDFNF  240
LGLPIRPEEK ECPYYMRTGS CKYGANCKFN HPDPTAVGGS NNPSGYGNGG SATLASSRSS  300
MRSWSSPRPS NETAAFVPMV LSPTRGVPPK NPEWNGYQVP VYPSERSTNF PVAYVVSPAA  360
AEPNVYRHHQ QQIQVEEYPE RPGQPECSYF LKTGDCKFKS NCRYHHPKDR IVKSPPCTLS  420
DKGLPLRPDQ NICAYYSRYG ICKYGPACKF DHPIHPVSSP MTGVDQHLSY DKAGEAGSQS  480
GSDSNLLQTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812623.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-132C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2I4DZQ40.0A0A2I4DZQ4_JUGRE; zinc finger CCCH domain-containing protein 43-like
STRINGEOY223601e-166(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-121C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]