PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025813-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 295aa    MW: 32634.1 Da    PI: 5.8184
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025813-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.32.1e-105228678374
                GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                         ++a+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++f
  WALNUT_00025813-RA   2 ASAFQVFNGISPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMDALEATGKRLSDF 88 
                         5789********************************************************************....*************** PP

                GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                         A++lg+pfef + +a+++ ++++e+L+v+++EalaV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+e
  WALNUT_00025813-RA  89 ADKLGLPFEFVP-LAEKVGNIDPERLNVSKREALAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVE 171
                         ************.59************************9..999999999999....**********************.899******* PP

                GRAS 260 aleyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                         a++yysalfdsl ++++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++ls +aa+qa lll++++s+gy
  WALNUT_00025813-RA 172 AIHYYSALFDSLgASSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHSWREKLQQCGFKGLSLSGNAATQATLLLAMFPSEGY 261
                         ************9999******************************888776.************************************** PP

                GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                         ++ e++g+l lgWkd +L+++SaWr
  WALNUT_00025813-RA 262 TLVEDNGTLKLGWKDLSLLTASAWR 286
                         ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.5971266IPR005202Transcription factor GRAS
PfamPF035147.3E-1032286IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MASAFQVFNG ISPLVKFSHF TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP  60
GGPPYVRLTG LGTSMDALEA TGKRLSDFAD KLGLPFEFVP LAEKVGNIDP ERLNVSKREA  120
LAVHWLQHSL YDVTGSDTNT LWLLQRLAPK VVTVVEQDLS HAGSFLGRFV EAIHYYSALF  180
DSLGASSYGE ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFHSWREK LQQCGFKGLS  240
LSGNAATQAT LLLAMFPSEG YTLVEDNGTL KLGWKDLSLL TASAWRPNFL AATDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.0128795380Protein SCARECROW
5b3h_A0.0128794379Protein SCARECROW
5b3h_D0.0128794379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816363.10.0PREDICTED: protein SCARECROW-like, partial
RefseqXP_018838179.10.0PREDICTED: protein SCARECROW-like
RefseqXP_018855146.10.0PREDICTED: protein SCARECROW-like, partial
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A2I4EAD70.0A0A2I4EAD7_JUGRE; protein SCARECROW-like
TrEMBLA0A2I4G2P80.0A0A2I4G2P8_JUGRE; protein SCARECROW-like
TrEMBLA0A2I4HG470.0A0A2I4HG47_JUGRE; protein SCARECROW-like
STRINGevm.model.supercontig_1018.10.0(Carica papaya)
STRINGEMJ076300.0(Prunus persica)
STRINGXP_010113028.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein