PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00025809-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 292aa MW: 33621.9 Da PI: 6.1016

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00025809-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159	1.8e-49	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd++ WALNUT_00025809-RA 10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTFGYWKATGKDRT 99 79***********************655.78***********88888999******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 vl+ ++e vg++ktLvfy++rap+g kt W+mhe+rle WALNUT_00025809-RA 100 VLEPrTREIVGMRKTLVFYRNRAPNGFKTGWIMHEFRLE 138 9867778***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-59	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.298	10	156	IPR003441	NAC domain
Pfam	PF02365	7.8E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGLRDIGAAL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLMEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTFGY WKATGKDRTV LEPRTREIVG MRKTLVFYRN 120 RAPNGFKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKAI TPNLEDSTKL SPQLMFETTA 180 SCVPNSLITL APSPDHPSNQ TVPCGYNQIT SFASSNPSHQ NQNQNNSLLN LLQFSQENTN 240 NNMNNEISSK GTDHDEYGFL WGMNLEESSL ENGVPSNLEE MRYEIDNSMV FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	10	157	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018816362.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q84TE6	8e-64	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2I4EAE2	0.0	A0A2I4EAE2_JUGRE; protein CUP-SHAPED COTYLEDON 3-like
STRING	EOX94424	1e-156	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-92	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]