PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025758-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 329aa    MW: 35709.8 Da    PI: 6.2697
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025758-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-29159212155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv++v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  WALNUT_00025758-RA 159 RPRLVWTPQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 212
                         59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-19156216IPR009057Homeodomain-like
PROSITE profilePS5129411.019156215IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-30157217IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-24160212IPR006447Myb domain, plants
PfamPF002496.0E-8162211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGKEVKMTDC HGAGGDDDRV AEWEAGLPCA DDLTPLSQAL IPPELASAFS ISPEPYRTVV  60
DVNRASQTTL STLRGQHSAK GFPTSENFKS FNEGRGGDPM AVEEADEIAD RDGSGSGSGS  120
NSGLRKSRRI DCAELEADSV LSTENESDDP SSAARTSKRP RLVWTPQLHK RFVDVVAHLG  180
IKSAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL SSEGLSSSSD HQLFASTPVP  240
PQSLNEAAVG SSHVHGNGHV PMQIPMSYPP PQMMPMPVLG VGHMGMPVGN HGFEWHNPYN  300
MLQQRDWSGN NNHNYGSMVS YPHVAPNDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-34159215157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818314.10.0PREDICTED: transcription factor PCL1-like
RefseqXP_018818315.10.0PREDICTED: transcription factor PCL1-like
RefseqXP_018818316.10.0PREDICTED: transcription factor PCL1-like
SwissprotQ9SNB49e-86PCL1_ARATH; Transcription factor LUX
TrEMBLA0A2I4EFZ50.0A0A2I4EFZ5_JUGRE; transcription factor PCL1-like
STRINGVIT_06s0004g05120.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.15e-75G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]