PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025642-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 266aa    MW: 30929.8 Da    PI: 6.3171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025642-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  WALNUT_00025642-RA 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding53.65.2e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+ E+  +++++ +lG++ W++Ia++++ gRt++++k++w++
  WALNUT_00025642-RA  67 RGCFTENEENEIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.535961IPR017930Myb domain
SuperFamilySSF466894.08E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002495.8E-111461IPR001005SANT/Myb domain
CDDcd001674.49E-41661No hitNo description
PROSITE profilePS5129426.52762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2565116IPR009057Homeodomain-like
SMARTSM007176.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1567110IPR001005SANT/Myb domain
CDDcd001676.81E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGCF TENEENEIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKLLS  120
LDPVTHEPNE QKGISSDKNE TAIESRSSKG EEKSEEFKFM DSHAKRDSLG TEEKMDGVKL  180
ILDETNDLLS SYDIWWGGLD FGSWIHQETN TKSYYSLENS VNPSMGESSS IQEESLQQWV  240
ESVDSVLSWD GFNYLEQELF FLQNSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4341516e-41AM434151.2 Vitis vinifera contig VV79X009259.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847148.10.0PREDICTED: myb-related protein 315-like
SwissprotP813941e-81MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2I4GTC50.0A0A2I4GTC5_JUGRE; myb-related protein 315-like
STRINGPOPTR_0001s36220.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]