PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00025617-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 297aa MW: 32362.7 Da PI: 9.4399

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00025617-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	22	82	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss WALNUT_00025617-RA 22 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 82 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	18	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	23	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MRGIGVVKSM EGSRPVRARP QKDQALNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW 60 TEGGSLRNVP VGGGSRKNKR SSTSTTSSST ISSPASSSSK KLPDDLTPPA AFPHSASQNP 120 KIHQGQDLNL AYPPTDHHQD YSNISKYHVD QLPFSTTTTT ADQYNKSHRQ NPSSSCTTSS 180 SQLSAMELLK TGISTSRGLS SFIPMSVSDS STIYTAGFPL QGFNKPTLNF SLEGFEAGGY 240 GSSTSTLQGV QETGARLLFP IEDLKQVPTN TSEFEQNRGQ GADHSTGYWN GMLGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812593.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
Swissprot	Q9SXG8	4e-50	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A2I4DZL7	0.0	A0A2I4DZL7_JUGRE; dof zinc finger protein DOF1.8-like
STRING	VIT_16s0098g01420.t01	1e-116	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-52	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]