PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025379-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 427aa    MW: 47040.4 Da    PI: 7.5811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025379-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07104124526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+++ + G C yG++C++ H+
  WALNUT_00025379-RA 104 VCKYWVQ-GNCGYGEQCRYLHS 124
                         7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9812046IPR000571Zinc finger, CCCH-type
SMARTSM003560.0372145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.98699126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-799124IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-7103123IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5104124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.8E-47124417IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.0E-5130169IPR001680WD40 repeat
SuperFamilySSF509782.11E-48131418IPR017986WD40-repeat-containing domain
PfamPF004005.9E-4134169IPR001680WD40 repeat
PROSITE profilePS5029420.066137386IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.452137178IPR001680WD40 repeat
PROSITE patternPS006780156170IPR019775WD40 repeat, conserved site
PRINTSPR003201.8E-6156170IPR020472G-protein beta WD-40 repeat
SMARTSM0032035209246IPR001680WD40 repeat
SMARTSM003206.0E-4253290IPR001680WD40 repeat
PfamPF004000.0032257290IPR001680WD40 repeat
PROSITE profilePS5008211.845260299IPR001680WD40 repeat
PROSITE patternPS006780277291IPR019775WD40 repeat, conserved site
PRINTSPR003201.8E-6277291IPR020472G-protein beta WD-40 repeat
SMARTSM003202.8E-4293330IPR001680WD40 repeat
PfamPF004000.0049295329IPR001680WD40 repeat
PRINTSPR003201.8E-6317331IPR020472G-protein beta WD-40 repeat
SMARTSM0032013334377IPR001680WD40 repeat
SMARTSM003207.6380417IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDLDSGSKRV FQRLGGPVDP KNQKVCYHWR AGNCNRRPCP FLHRELPPPS SNGAPYKRTH  60
GFVDDSSGFS DPRSRTNYTG STWGRSHGGA NSRTVRKPER VFKVCKYWVQ GNCGYGEQCR  120
YLHSWSLGEG FSMLTQLEGH QKVVSGIALP TGSNKLYSGS KDETVRVWDC QSGQCMRVIN  180
LGGEVGCMIS EGPWVFVGMP NFVKAWNTET NTELSLSGPI GEVYAMVVGN GLLFAGTQDG  240
SILAWTFNAA TNCFEPAASL KGHTLGVVSL VVGANRLYSG SMDCTIRVWN LETLQCIQTL  300
KEHTEVVMSV LCWDQFLLSC SLDKTIKVWV ATERGNLEVT YTHNEEQGLL TLCGMHDSEA  360
KPILLCSSND NSVHLYDLPS FSERGKIFAK QEVRAIQMGP SGVFFTGDGA GQVKVWQWLP  420
EPAAIAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-241164168323Tako8
6g6n_A2e-241164168323Tako8
6g6n_B2e-241164168323Tako8
6g6n_C2e-241164168323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810420.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2I4DTE60.0A0A2I4DTE6_JUGRE; zinc finger CCCH domain-containing protein 48-like isoform X2
STRINGXP_009371273.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1