PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00025379-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 47040.4 Da PI: 7.5811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 104 | 124 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ + G C yG++C++ H+ WALNUT_00025379-RA 104 VCKYWVQ-GNCGYGEQCRYLHS 124 7******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.981 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.037 | 21 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-7 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-5 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-7 | 103 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-5 | 104 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.8E-47 | 124 | 417 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 4.0E-5 | 130 | 169 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.11E-48 | 131 | 418 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 5.9E-4 | 134 | 169 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 20.066 | 137 | 386 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 14.452 | 137 | 178 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 156 | 170 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 1.8E-6 | 156 | 170 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 35 | 209 | 246 | IPR001680 | WD40 repeat |
SMART | SM00320 | 6.0E-4 | 253 | 290 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0032 | 257 | 290 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.845 | 260 | 299 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 277 | 291 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 1.8E-6 | 277 | 291 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 2.8E-4 | 293 | 330 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0049 | 295 | 329 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.8E-6 | 317 | 331 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 13 | 334 | 377 | IPR001680 | WD40 repeat |
SMART | SM00320 | 7.6 | 380 | 417 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDLDSGSKRV FQRLGGPVDP KNQKVCYHWR AGNCNRRPCP FLHRELPPPS SNGAPYKRTH 60 GFVDDSSGFS DPRSRTNYTG STWGRSHGGA NSRTVRKPER VFKVCKYWVQ GNCGYGEQCR 120 YLHSWSLGEG FSMLTQLEGH QKVVSGIALP TGSNKLYSGS KDETVRVWDC QSGQCMRVIN 180 LGGEVGCMIS EGPWVFVGMP NFVKAWNTET NTELSLSGPI GEVYAMVVGN GLLFAGTQDG 240 SILAWTFNAA TNCFEPAASL KGHTLGVVSL VVGANRLYSG SMDCTIRVWN LETLQCIQTL 300 KEHTEVVMSV LCWDQFLLSC SLDKTIKVWV ATERGNLEVT YTHNEEQGLL TLCGMHDSEA 360 KPILLCSSND NSVHLYDLPS FSERGKIFAK QEVRAIQMGP SGVFFTGDGA GQVKVWQWLP 420 EPAAIAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-24 | 116 | 416 | 8 | 323 | Tako8 |
6g6n_A | 2e-24 | 116 | 416 | 8 | 323 | Tako8 |
6g6n_B | 2e-24 | 116 | 416 | 8 | 323 | Tako8 |
6g6n_C | 2e-24 | 116 | 416 | 8 | 323 | Tako8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018810420.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A2I4DTE6 | 0.0 | A0A2I4DTE6_JUGRE; zinc finger CCCH domain-containing protein 48-like isoform X2 | ||||
STRING | XP_009371273.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7446 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |