PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00025289-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22191.5 Da PI: 6.4924 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.4 | 1.1e-28 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C + Cvl+ ++ p +q ++ ++k+FG+s +l++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++ ++ WALNUT_00025289-RA 2 SCNGCRVLRKGCGETCVLRSCLqginsPTAQGNAVLLLAKFFGRSDLLSFISAVPESQRPALFQSLLYEACGRTVNPVDGAVGLLSRGMWH 92 6*************************999************************************************************** PP DUF260 87 leqlkaelallk 98 l++l++e+al++ WALNUT_00025289-RA 93 LCHLAVETALAG 104 *******99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.494 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-24 | 2 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MSCNGCRVLR KGCGETCVLR SCLQGINSPT AQGNAVLLLA KFFGRSDLLS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVD GAVGLLSRGM WHLCHLAVET ALAGGDLTPI ADIATAGISP 120 DAFGTDESAV ETLYSPSAPS MKENQPSDPL TLSLAPKLSN DMSAALKRPI PWRVKRSMDL 180 TTSFKSDDSE MTSLESPGKD RKLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018806509.1 | 1e-151 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 2e-54 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 2e-54 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2I4DH83 | 1e-150 | A0A2I4DH83_JUGRE; LOB domain-containing protein 37-like | ||||
STRING | cassava4.1_016184m | 5e-74 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 9e-57 | LOB domain-containing protein 38 |
Publications ? help Back to Top | |||
---|---|---|---|
|