PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025289-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 208aa    MW: 22191.5 Da    PI: 6.4924
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025289-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41.1e-282104198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C + Cvl+ ++     p +q ++   ++k+FG+s +l++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++ ++
  WALNUT_00025289-RA   2 SCNGCRVLRKGCGETCVLRSCLqginsPTAQGNAVLLLAKFFGRSDLLSFISAVPESQRPALFQSLLYEACGRTVNPVDGAVGLLSRGMWH 92 
                         6*************************999************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         l++l++e+al++
  WALNUT_00025289-RA  93 LCHLAVETALAG 104
                         *******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4941107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-242102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSCNGCRVLR KGCGETCVLR SCLQGINSPT AQGNAVLLLA KFFGRSDLLS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVD GAVGLLSRGM WHLCHLAVET ALAGGDLTPI ADIATAGISP  120
DAFGTDESAV ETLYSPSAPS MKENQPSDPL TLSLAPKLSN DMSAALKRPI PWRVKRSMDL  180
TTSFKSDDSE MTSLESPGKD RKLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806509.11e-151PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN112e-54LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SN232e-54LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2I4DH831e-150A0A2I4DH83_JUGRE; LOB domain-containing protein 37-like
STRINGcassava4.1_016184m5e-74(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.19e-57LOB domain-containing protein 38
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]