PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025246-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 714aa    MW: 76588.1 Da    PI: 6.7224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025246-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16476522455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  WALNUT_00025246-RA 476 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 522
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.70E-17468526No hitNo description
Gene3DG3DSA:4.10.280.104.9E-20469530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-20469533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13476522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPLSELYRMA KGKLDSNQEK NTTSSTDLSF LPENDLFELV WENGQILKQG QSSRARKSPT  60
SNSLPSYCLP SHTVKTRDKD MGNGNSSKVG KFGVLDSVLS EIPVSVPSSE IDLSQDDDMM  120
PWLNYPIHEP LQHEYCSEFL PEFSCVTGNE LSTDSNVASG DKRNSCNMVY RDCHTDSVND  180
GVSLGQGDVS KVSQVGGGDA TISRTNFRPF HSLSQQCQTS LPSLRSKVSD VTGNNTSNVM  240
HHTLCGDSTR VASAADGFHS IQLQKKDPRP PGNNSNLMNF SHFSRPAALV KANLQNIGLM  300
AGSGSSMQRI ASKDKGSAAP SKNSPESTII DSSSGSRKES SSHRQPVTFP SKVDLKPLDD  360
KPVEEPIASI QSEAVCQEDA SKNDKTSNQV LGESATKGLR DCEKTTEPVV PSSSVCSGNS  420
VERASDDPTH NLKRKGHDTE ESECHSEDVE QESVGAKKAA PARGGTGSKR SRAAEVHNLS  480
ERRRRDRINE KMRALQELIP NCNKVDKASM LDEAIEYLKT LQFQVQIMSM GAGLYMPPMM  540
LPTGMQQMSA PHMAHFSPMG LGMGMGMGMS FGMGMPDMNG GSSGYPMIQV PPVQGAHLPV  600
PPISGRTAFH AMAGSNLPMF GLPSQGIPMS MSCAPIIPLS GGPLMKSAAG PNACGVVGPM  660
ENVDSALAST SKDPIQTINP QVTHSTGANS SMNETSKKVC AFFVGKETYN ILKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018856447.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A2I4HK490.0A0A2I4HK49_JUGRE; transcription factor PIF3-like isoform X1
STRINGEMJ084100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-77phytochrome interacting factor 3