PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025175-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 398aa    MW: 44492.2 Da    PI: 6.3991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025175-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.9e-52151412128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPtdeelv +yLk+k+++++l++ e ik vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
  WALNUT_00025175-RA  15 LPGFRFHPTDEELVGFYLKRKIQQRTLPI-ELIKPVDIYKYDPWDLPKVAATGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 104
                         69***************************.89***************8888999************************************* PP

                 NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  WALNUT_00025175-RA 105 YSSdGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141
                         **966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5813172IPR003441NAC domain
PROSITE profilePS5100556.75814172IPR003441NAC domain
PfamPF023651.4E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDEKNDVEKV DDVILPGFRF HPTDEELVGF YLKRKIQQRT LPIELIKPVD IYKYDPWDLP  60
KVAATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGS KCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPSLSDLAPP KKFLDKNIPA NDSWAICRIF KKTNSMAQRA  180
LSHSWVSSLP ETLATETLTQ GTHCSQFSPE NISCTTEIGS AMQFCHNNHD LQQSSTACFS  240
AFDIPSYKPI NHIVSKPLPF PLSNGELPDG FTLISSLDVS GPIKCTVDTP SILLNSALGE  300
LTSASESIDF EASQQQLSGF SISLPQDVQE NMGTGEDEAG LRRNLDATLL NNQWGTIRSI  360
GFPFSLPSND AWKPNLSWDS PPCPSEMSTS YSANKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-521617517171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850709.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-111FEZ_ARATH; Protein FEZ
TrEMBLA0A2I4H3K00.0A0A2I4H3K0_JUGRE; protein FEZ-like
STRINGEOY034430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-110NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]