PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00025139-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 291aa MW: 30617.9 Da PI: 9.6842 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 34 | 57 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H WALNUT_00025139-RA 34 KSKPCTKFFSTAGCPFGESCHFLH 57 7789******************** PP | |||||||
2 | zf-CCCH | 25.5 | 2.4e-08 | 98 | 122 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ C+ + Ck+Gd+C+FaH WALNUT_00025139-RA 98 KTRMCNKYNTAEGCKFGDKCHFAHN 122 89**********************7 PP | |||||||
3 | zf-CCCH | 34.4 | 3.8e-11 | 258 | 282 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f + G C +G+rC+FaHg WALNUT_00025139-RA 258 YKTKLCENFTK-GSCTFGERCHFAHG 282 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.709 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.91 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-8 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-8 | 95 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-13 | 95 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.057 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.34E-16 | 155 | 236 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.1E-17 | 164 | 233 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.2E-13 | 164 | 234 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.99 | 165 | 229 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.10E-16 | 167 | 229 | No hit | No description |
Pfam | PF00013 | 1.3E-12 | 167 | 230 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-17 | 253 | 288 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-8 | 256 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-7 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.577 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 258 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MDIRKRGRPE AGLNANGGAK KFKQEMDSTG VGSKSKPCTK FFSTAGCPFG ESCHFLHYVP 60 GGYNAVAQMM NLAPAVPAAS RNMAGPPTIQ NGSTPAVKTR MCNKYNTAEG CKFGDKCHFA 120 HNDWELGKPI APSHEDPRAM GPIPGRMGSR MELAPPGPAA SFGASATAKI SVDASLAGAI 180 IGKGGVNSKQ ICRQTGAKLS IRDHESDPNL RNIELEGTFE QIKEASAMVR QLIVTVSVSG 240 PPKTHGMPGA AAPPGSNYKT KLCENFTKGS CTFGERCHFA HGAAELRKSG V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805967.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-115 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2I4DFQ7 | 0.0 | A0A2I4DFQ7_JUGRE; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | VIT_08s0007g06400.t01 | 1e-168 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-61 | C3H family protein |