PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025133-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 319aa    MW: 34670.9 Da    PI: 9.1893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025133-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.5e-191257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  WALNUT_00025133-RA 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                        79******************************.***********985 PP
2Myb_DNA-binding574.4e-1866108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+eEde +++a+ ++G++ W+tIar ++ gRt++ +k++w++ 
  WALNUT_00025133-RA  66 PFTPEEDETIIRAHSRFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.047762IPR017930Myb domain
SuperFamilySSF466891.12E-329105IPR009057Homeodomain-like
SMARTSM007171.1E-161160IPR001005SANT/Myb domain
PfamPF002491.9E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-261365IPR009057Homeodomain-like
CDDcd001675.38E-161456No hitNo description
SMARTSM007172.5E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.58864113IPR017930Myb domain
CDDcd001671.55E-1266109No hitNo description
PfamPF002491.7E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASTRKDVDR IKGPWSPEED EALQRLVQNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFTPE EDETIIRAHS RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMTEDL  120
SDDAHAQQPL KRSASVGAGS GTGTGTGAAF SGLYLNPSSP SGSDLSDSSL PGMSPSRVYR  180
PLARTGSLTL PTQQLDTSSS NTDPPTSLSL SLPGSDLFDV SNQAIGSNQS GSATQVVQQL  240
VPPLPPTPPV PVAQQAPVAG QNGYEKQFFS AEFLAVMQEM IRKEVRNYMS GIEQKGLCNM  300
QTDAIRNAVV KRIGFSKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-42111123104C-Myb DNA-Binding Domain
1msf_C4e-42111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805688.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231606e-97MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2I4DEX00.0A0A2I4DEX0_JUGRE; transcription factor MYB44-like
STRINGevm.model.supercontig_21.1451e-158(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-71myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]