PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00025131-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YB | ||||||||
Protein Properties | Length: 185aa MW: 20788.3 Da PI: 5.8641 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 44.3 | 4.2e-14 | 48 | 141 | 7 | 95 |
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +lP a v r++k l + + + k++ e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++++plk+ l ++r+ WALNUT_00025131-RA 48 ELPRAIVRRVVKDKLSQcspdcDMSVHKESLLAFSESARIFIHYLSATANDICRESKRQTINADDVLKALEEIEFPEFLKPLKASLDEFRQ 138 68999999999998865222124567788888899*******************************************************8 PP NF-YB 93 leg 95 ++ WALNUT_00025131-RA 139 KNA 141 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.0E-34 | 44 | 178 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-9 | 48 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.38E-26 | 49 | 173 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MNSTSSRTRK AETMAGNKTL ETHEDERVSA TTDSRKKEMD KVIPEAGELP RAIVRRVVKD 60 KLSQCSPDCD MSVHKESLLA FSESARIFIH YLSATANDIC RESKRQTINA DDVLKALEEI 120 EFPEFLKPLK ASLDEFRQKN AGKKAKVAKE KEVKKRKMEE KAPQKSGGGE RDEEEEGDQD 180 GTGDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 1e-13 | 49 | 157 | 18 | 121 | DNA polymerase epsilon subunit D |
5y27_A | 1e-13 | 49 | 157 | 18 | 121 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | KEVKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811029.1 | 1e-133 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2I4DV53 | 1e-131 | A0A2I4DV53_JUGRE; DNA polymerase epsilon subunit 3 | ||||
STRING | XP_010031521.1 | 2e-61 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 5e-46 | nuclear factor Y, subunit B11 |