PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024979-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 341aa    MW: 36550.6 Da    PI: 8.5606
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024979-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.7e-3872132262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  WALNUT_00024979-RA  72 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRST 132
                         67899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3460130IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3275130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.29276130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWQQQHS NYQQPAHEDG SENPQVLHPP PRPPIVGGSG GGGPIRPGSM  60
SDRAKLAKIP QPEAALKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP  120
VGGGCRRNKR STRSKSPATA ERQATGSSST STVSSNCCAT DMLSHLPPPQ ASQSPFLPPF  180
HHLSDYASGN HCLNFGGFQP PVGVVGGIGG DVEFQIGTGS SGGGSALSTG LAHEQWRLQQ  240
VQQFPFFANL GTPNGLFQFE GENVDRPSYV GVAGQLRSKP LESAVTCVSD QLATVKMEDN  300
QRLSLSRNLS GTAGNDHHYW GGGSAWTDLS GFTSSSTSHM L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810680.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A2I4DU570.0A0A2I4DU57_JUGRE; dof zinc finger protein DOF3.6-like
STRINGAquca_003_00022.11e-119(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.24e-55OBF-binding protein 3