PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024941-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 312aa    MW: 34663.8 Da    PI: 7.7312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024941-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.5e-162574255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  WALNUT_00024941-RA 25 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 74
                        899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-182195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-222295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0442373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-142578No hitNo description
PfamPF000102.1E-132574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-122979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MLSPYIGMLI MKLDPKNNDK ASAIRSKHSV TEQRRRSKIN ERFQILRDLI PHSDQKRDTA  60
SFLLEVIEYV QYLQEKVQKN EGSYQGWSSE PTKLMPWRNS HWRAQNFVGH PQAIENSSGM  120
GSTFPGKFDE NNVSITPTML TSTQRRVESD PSRDIACKPI DLQPELVNKG STVPIPQQAN  180
VLASVRSDGV QAHPLQGPYS DAQSTECPMT SETLNQQEEL IVEGGTISIS SVYSDGLLNA  240
LAQALQSAGV NLSQASVSVQ IDLAKRRNRG MTSGTSTPKD HEIPPSSHQA MAHLKDAGRR  300
EDSDQDQKRL KT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810846.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_018810847.10.0PREDICTED: transcription factor BIM2-like
SwissprotQ9CAA41e-102BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2I4DUM70.0A0A2I4DUM7_JUGRE; transcription factor BIM2-like
STRINGEMJ237641e-162(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-97BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]