PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024889-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YB | ||||||||
Protein Properties | Length: 239aa MW: 26175.7 Da PI: 5.7395 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.6 | 8.9e-54 | 28 | 123 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++qd+flPianvsrimk+ lP+nakisk+aketvqecvse+isfvt+easdkcqrekrktingddllwa+ tlGfe+yv++l+ yl kyre WALNUT_00024889-RA 28 KDQDKFLPIANVSRIMKRSLPTNAKISKEAKETVQECVSEYISFVTGEASDKCQREKRKTINGDDLLWAMMTLGFENYVKSLRNYLGKYRE 118 79***************************************************************************************** PP NF-YB 93 legek 97 +ege+ WALNUT_00024889-RA 119 IEGEN 123 **996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-49 | 23 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.81E-37 | 30 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.9E-26 | 33 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.8E-18 | 61 | 79 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 64 | 80 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.8E-18 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 1.8E-18 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTGKRTQTSP LGSPPSSSGN ISDDSSSKDQ DKFLPIANVS RIMKRSLPTN AKISKEAKET 60 VQECVSEYIS FVTGEASDKC QREKRKTING DDLLWAMMTL GFENYVKSLR NYLGKYREIE 120 GENSMDTQGD KPPSTDSCPD HGSNNYNKIQ TASSSTTNNV LANIIADFHQ RFSGGFYSFG 180 PQETPKTSFG ECGRVAGCEE NSVIGAFKVN GIRENGDGDG NRSSSAAEAH LHQEIDQYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-44 | 28 | 118 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-44 | 28 | 118 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835893.1 | 1e-127 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A2I4FW63 | 1e-126 | A0A2I4FW63_JUGRE; nuclear transcription factor Y subunit B-1-like | ||||
STRING | XP_006493850.1 | 8e-81 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 9e-55 | nuclear factor Y, subunit B3 |