PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00024818-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

CAMTA

Protein Properties

Length: 1049aa MW: 117895 Da PI: 5.5617

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00024818-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.2	2.2e-55	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 e ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+frkDG++w+kk+dgktv E+he+LKvg+ve+l+cyYah+e+np WALNUT_00024818-RA 14 EaQTRWLKPAEVLFILQNHEKYQLTEESPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGKTVGEAHERLKVGNVEALNCYYAHGEQNPD 104 5599************************************************************************************* PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fqrr+yw+L+ ++e+ivlvhy++ WALNUT_00024818-RA 105 FQRRSYWMLDPAFEHIVLVHYRQ 127 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.547	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.1E-75	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.3E-48	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.5E-8	485	573	IPR013783	Immunoglobulin-like fold
CDD	cd00102	1.33E-4	488	572	No hit	No description
Pfam	PF01833	1.4E-7	488	571	IPR002909	IPT domain
SuperFamily	SSF81296	2.33E-17	488	572	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.3E-15	685	781	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.6	686	778	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.18E-15	689	780	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.3E-7	706	779	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.82E-13	706	778	No hit	No description
SMART	SM00248	0.0026	719	748	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.873	719	751	IPR002110	Ankyrin repeat
SMART	SM00248	1900	758	787	IPR002110	Ankyrin repeat
SMART	SM00015	15	836	858	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.327	837	861	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.11E-7	837	940	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	7.8	888	910	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	889	918	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.069	891	909	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.004	911	933	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.1E-4	913	933	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.029	913	936	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence Send to blast
MTQSGYDIKD LFREAQTRWL KPAEVLFILQ NHEKYQLTEE SPQQPTSGSL FLFNKRVLRF 60 FRKDGHNWRK KRDGKTVGEA HERLKVGNVE ALNCYYAHGE QNPDFQRRSY WMLDPAFEHI 120 VLVHYRQLTE GRHTSGSVVL LSPGSSSTYS QSPTSYTTQN PGSNSMLSDF LEPYQSSSSP 180 GSEVTSEIAI KNNGMNDLDR MSRTGQRESS SELEVTHALR KLEEQLSLDE DSFKDINLFG 240 NRGESSNDSY IPEYERENSM QDQSAASLHG PEYIDQCNRG HALLRKLEKQ LSLDEESFKE 300 VGPFSNRGES PNDSDIPEYD RENSKQDQYY RGHDGVQDNS NNLEILHDAG YNGKHHKQSL 360 GQDFADGSKG SLSWEEVFES FDTSSCVESQ RKHLFTLDGN EKPLSLSMKA PKEEEHSHWI 420 HSNADNIENT SLLLLKEADN FRFPTYHSLR ETHETNSDYY TTLFDQGQIG MPLEADSSLT 480 VAEKQKFTIR EISPEWGYEN VATKVVIIGS FLCDPSESAW ACMFGDIEVP VQIIQEGVIR 540 CEAPSHLPGK VTLCLTSGNR ESCSEVREFE YRMNTRTCTH CHSQKSEATK SPEELLLLVR 600 FVQMLLSELS MEKGDSLESD IDLLRRSKAD YDSWSCIIEA LLDGSGTSSG IIDWVFQELL 660 KDKLQHWLSS RSQERSDQTG CSLSKKEQGI IHMIAGLGFE WAMSPILNSG VNINFRDIRG 720 WTALHWAAQF GREKMVAALI ASGASAGAVT DPTSQDPQGK TPASIAATSG HKGLAGYLSE 780 VALTSHLSSL TLEESELSKG SAEVEAEMTL NKISQGSLTA DGDQLSLIGT LAAVRNAAQA 840 AARIQSAFRA HSFRKRQQRE AVVSIDDYGI NSDDMSAMSK LAFRNSRYYN SAALSIQKKY 900 RGWKGRQDFL AFRRKVVKIQ AHVRGHQVRK SYKVICWAVG ILDKVVLRWR RKGVGLRGFR 960 NETEIIDETE DEDILKVFRK QKVDVAIDEA VSLVMSMVES PDARQQYHRV LEGYRQAKAE 1020 LGGTGSGVGS TSLGNISGME DDEDMYQYP

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence Send to blast

MTQSGYDIKD LFREAQTRWL KPAEVLFILQ NHEKYQLTEE SPQQPTSGSL FLFNKRVLRF  60
FRKDGHNWRK KRDGKTVGEA HERLKVGNVE ALNCYYAHGE QNPDFQRRSY WMLDPAFEHI  120
VLVHYRQLTE GRHTSGSVVL LSPGSSSTYS QSPTSYTTQN PGSNSMLSDF LEPYQSSSSP  180
GSEVTSEIAI KNNGMNDLDR MSRTGQRESS SELEVTHALR KLEEQLSLDE DSFKDINLFG  240
NRGESSNDSY IPEYERENSM QDQSAASLHG PEYIDQCNRG HALLRKLEKQ LSLDEESFKE  300
VGPFSNRGES PNDSDIPEYD RENSKQDQYY RGHDGVQDNS NNLEILHDAG YNGKHHKQSL  360
GQDFADGSKG SLSWEEVFES FDTSSCVESQ RKHLFTLDGN EKPLSLSMKA PKEEEHSHWI  420
HSNADNIENT SLLLLKEADN FRFPTYHSLR ETHETNSDYY TTLFDQGQIG MPLEADSSLT  480
VAEKQKFTIR EISPEWGYEN VATKVVIIGS FLCDPSESAW ACMFGDIEVP VQIIQEGVIR  540
CEAPSHLPGK VTLCLTSGNR ESCSEVREFE YRMNTRTCTH CHSQKSEATK SPEELLLLVR  600
FVQMLLSELS MEKGDSLESD IDLLRRSKAD YDSWSCIIEA LLDGSGTSSG IIDWVFQELL  660
KDKLQHWLSS RSQERSDQTG CSLSKKEQGI IHMIAGLGFE WAMSPILNSG VNINFRDIRG  720
WTALHWAAQF GREKMVAALI ASGASAGAVT DPTSQDPQGK TPASIAATSG HKGLAGYLSE  780
VALTSHLSSL TLEESELSKG SAEVEAEMTL NKISQGSLTA DGDQLSLIGT LAAVRNAAQA  840
AARIQSAFRA HSFRKRQQRE AVVSIDDYGI NSDDMSAMSK LAFRNSRYYN SAALSIQKKY  900
RGWKGRQDFL AFRRKVVKIQ AHVRGHQVRK SYKVICWAVG ILDKVVLRWR RKGVGLRGFR  960
NETEIIDETE DEDILKVFRK QKVDVAIDEA VSLVMSMVES PDARQQYHRV LEGYRQAKAE  1020
LGGTGSGVGS TSLGNISGME DDEDMYQYP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807030.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2I4DIQ4	0.0	A0A2I4DIQ4_JUGRE; calmodulin-binding transcription activator 4-like
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]