PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024814-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 322aa    MW: 35243.3 Da    PI: 8.9043
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024814-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.2e-4125101278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++yhrrhkvCe+hsk+++v+++gleqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  WALNUT_00024814-RA  25 CLVDGCNSDLSKCRDYHRRHKVCEIHSKTSKVTIRGLEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 101
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-341786IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1462299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-3923104IPR004333Transcription factor, SBP-box
PfamPF031104.0E-302598IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MESSSSSGST KRARAAGNGG QVPLCLVDGC NSDLSKCRDY HRRHKVCEIH SKTSKVTIRG  60
LEQRFCQQCS RFHSLGEFDE GKRSCRKRLD GHNRRRRKPQ PESLSLNSGR LPSSYQGTRI  120
LTFSSPQLFP QGPVASSAWF GAVKVESDTA MLYNNHSQLN FFDRKNITPD SLFHNYKEGK  180
QFPFSQGTSS SLLPGAAVCQ LPPDANFASN NASSSQKEFS NELNRVINSD CALSLLSSTR  240
AETRQVGLSQ MMLQFNPSPS AQSSLVPSLQ YNGLGMEGKT MSSALVNDCS SNANLHCEGM  300
FSIGPDGSSA SGPHQTHSFL WE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301598284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18198KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807033.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLA0A2I4DIR60.0A0A2I4DIR6_JUGRE; teosinte glume architecture 1-like
STRINGVIT_01s0010g03910.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-50SBP family protein