PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024788-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 413aa    MW: 46220.7 Da    PI: 4.9639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024788-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT eEde+l+++++  G g+W++ ++  g+ R++k+c++rw +yl
  WALNUT_00024788-RA 14 KGRWTSEEDEILINYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP

2Myb_DNA-binding51.81.9e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ ++eE+++++++++ +G++ W++Ia+ ++ gRt++++k++w+++l
  WALNUT_00024788-RA  67 RGNISAEEEQIIIKLHTSMGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112
                         7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.487961IPR017930Myb domain
SuperFamilySSF466896.5E-2811108IPR009057Homeodomain-like
SMARTSM007177.5E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
CDDcd001676.03E-91661No hitNo description
PROSITE profilePS5129425.39762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2565116IPR009057Homeodomain-like
SMARTSM007176.1E-1666114IPR001005SANT/Myb domain
PfamPF002496.4E-1467112IPR001005SANT/Myb domain
CDDcd001679.90E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTSE EDEILINYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SAEEEQIIIK LHTSMGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIHTLR  120
RVSRTETLVP TIMDLAKVDV PVKRRGGRTS RWAMMKKGKK YIQKHVGIPT KPKDSTVNTT  180
VSSIPSPPTT SLVKETTFST AVIDDCMVSD HPDQVNDKER DNSLVLCPEE ENKYENQVVL  240
FPSGHEKETE TLGPYDHEVG DIDGVWLGFD YNMSNGLMDS NGILTLNDKG NENPDHHDVM  300
GTIHHDVEKK DSTGFVCANK MAMMAASEDL ESVNYSSNGE SGEWYSCSSM ASGFDDGVDN  360
WEWEGVVQGN GISDQNESML SWLWESDNLE GDSSNLAGID PDKQDAMVAW LLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821204.10.0PREDICTED: transcription factor MYB12-like
TrEMBLA0A2I4EP800.0A0A2I4EP80_JUGRE; transcription factor MYB12-like
STRINGEOX952261e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-76myb domain protein 12