PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024788-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 46220.7 Da PI: 4.9639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+l+++++ G g+W++ ++ g+ R++k+c++rw +yl WALNUT_00024788-RA 14 KGRWTSEEDEILINYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+++++++++ +G++ W++Ia+ ++ gRt++++k++w+++l WALNUT_00024788-RA 67 RGNISAEEEQIIIKLHTSMGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.487 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.5E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.03E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.397 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.90E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTSE EDEILINYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SAEEEQIIIK LHTSMGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIHTLR 120 RVSRTETLVP TIMDLAKVDV PVKRRGGRTS RWAMMKKGKK YIQKHVGIPT KPKDSTVNTT 180 VSSIPSPPTT SLVKETTFST AVIDDCMVSD HPDQVNDKER DNSLVLCPEE ENKYENQVVL 240 FPSGHEKETE TLGPYDHEVG DIDGVWLGFD YNMSNGLMDS NGILTLNDKG NENPDHHDVM 300 GTIHHDVEKK DSTGFVCANK MAMMAASEDL ESVNYSSNGE SGEWYSCSSM ASGFDDGVDN 360 WEWEGVVQGN GISDQNESML SWLWESDNLE GDSSNLAGID PDKQDAMVAW LLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821204.1 | 0.0 | PREDICTED: transcription factor MYB12-like | ||||
TrEMBL | A0A2I4EP80 | 0.0 | A0A2I4EP80_JUGRE; transcription factor MYB12-like | ||||
STRING | EOX95226 | 1e-116 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-76 | myb domain protein 12 |