PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024726-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 225aa    MW: 25322.7 Da    PI: 8.6249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024726-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08169216455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  WALNUT_00024726-RA 169 SHSLAERVRRGKINDRLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 216
                         8*************************8....3569999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-15163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-10163220No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15165224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-8171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAEFTAGFQS FRAQFPVSDI DPNMEIMTNQ YAGINPSVLT TPELDFQCFM PFCNHNFFSH  60
QVPEFTGNLA ENLLGSVLQE FSQNLVPAQP VMNAAAGNEF HESKKRKSME KPESSSETSR  120
PQVSETGSKR KNVMSSGKGK KVKNTLKEED QKPKEVVHVR ARRGQATDSH SLAERVRRGK  180
INDRLRCLQD IVPGCYKSMG MAVMLDEIIN YVQSLQNQVE RAKAY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2342731e-57KM234273.1 UNVERIFIED: Populus alba x Populus glandulosa cultivar Hyeonsasi brassinosteroid sinaling protein-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806041.11e-162PREDICTED: transcription factor BEE 3-like
TrEMBLA0A2I4DFV81e-161A0A2I4DFV8_JUGRE; transcription factor BEE 3-like
STRINGPOPTR_0012s05210.14e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.24e-45BR enhanced expression 3