PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00024622-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 884aa MW: 96491.9 Da PI: 7.0986

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00024622-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.6e-14	347	392	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l ++++ lG++ W++Ia ++ gRt++++k+ w+++l WALNUT_00024622-RA 347 RGPFTPEEEKLVIRLHGILGNR-WAAIACQLP-GRTDNEIKNLWNTHL 392 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50141	9.499	156	199	IPR002466	Adenosine deaminase/editase
Pfam	PF02137	1.7E-6	157	224	IPR002466	Adenosine deaminase/editase
SMART	SM00552	9.7E-80	303	881	IPR002466	Adenosine deaminase/editase
Gene3D	G3DSA:1.10.10.60	6.9E-22	341	397	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.81E-13	342	398	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.087	342	396	IPR017930	Myb domain
SMART	SM00717	5.1E-13	346	394	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-13	347	392	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-9	349	392	No hit	No description
Pfam	PF02137	7.9E-85	515	874	IPR002466	Adenosine deaminase/editase
PROSITE profile	PS50141	51.325	515	880	IPR002466	Adenosine deaminase/editase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0003677	Molecular Function	DNA binding
GO:0003723	Molecular Function	RNA binding
GO:0004000	Molecular Function	adenosine deaminase activity

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MSGLSFVSPQ LISPPCEPPT FVELSTRPSK FSSTSVGIKN DSVGPPLGSQ RPTQTRAAAS 60 DDSEKPSAVT SQQLKGASNI PAVPIVPGSQ EGPEIRKPSI DSGQCLAQRR MTTYGDSKEG 120 STVMEMGEID EGEGLELFTG TGLQQISMHH VLHSLISGAL LSYFLLPVYL SSVTVGGSPN 180 SPEEFCLEDC LRIALYDRIQ PQDTHDHFLL KTNNSPAIFL TYGHGTTDNP TNSPPVQLMG 240 LVPRPPLLKG LLVSMSSLPL VVPALLNQKP PLTTPPASTI LFHLSLGLEC ISDLSRVNMA 300 EASWGERVAE KVFSLYNSLP KKGKPQGREV TVLAAFLLSS PSQDIKRGPF TPEEEKLVIR 360 LHGILGNRWA AIACQLPGRT DNEIKNLWNT HLKKRLICMG LDPQTHEPVT SCSTNIKASA 420 SPTTRHIAQW ESARLEAEAR LSTESSLFNP VPVGGSDSDY FLRIWNSEVG ESFRKFSMGE 480 KTLCQNSVSQ ASSSTKCGSI SPVTTEIGTI LAVVALGTGT KCIGRSLLSQ RGDVVNDSHA 540 EIIARRALLR FFYAQIQGLA HFHSKQNYID GSSKLQGCDI NDLPFQLDPD SLGQVKYTLK 600 PGWQLHLFIS QPPCGFASLS CLLFPPNCNP SRERDSQPNM GDLNNSISEP WEVLVKNNGV 660 ASQHIGSVQR KPGRGDTTSS VSCSDKIARW NVVGVQGALL SYFLLPVYLS SVTVGGSPNS 720 PEEFCLEDCL RIALYDRIQP LSNEITSPFQ VNQPLFWAAP IPPKEFQHSE TALSTLTCGY 780 SICWNRSGLH EVILGTTGRK QGTSAKGALF PSTESSLCKK RLLEIFLSLE HECQTEYPAN 840 EISYRALKQR AQEYMTMSKL FKGSQPFSNW LLKPVDTEAF SIFR

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MSGLSFVSPQ LISPPCEPPT FVELSTRPSK FSSTSVGIKN DSVGPPLGSQ RPTQTRAAAS  60
DDSEKPSAVT SQQLKGASNI PAVPIVPGSQ EGPEIRKPSI DSGQCLAQRR MTTYGDSKEG  120
STVMEMGEID EGEGLELFTG TGLQQISMHH VLHSLISGAL LSYFLLPVYL SSVTVGGSPN  180
SPEEFCLEDC LRIALYDRIQ PQDTHDHFLL KTNNSPAIFL TYGHGTTDNP TNSPPVQLMG  240
LVPRPPLLKG LLVSMSSLPL VVPALLNQKP PLTTPPASTI LFHLSLGLEC ISDLSRVNMA  300
EASWGERVAE KVFSLYNSLP KKGKPQGREV TVLAAFLLSS PSQDIKRGPF TPEEEKLVIR  360
LHGILGNRWA AIACQLPGRT DNEIKNLWNT HLKKRLICMG LDPQTHEPVT SCSTNIKASA  420
SPTTRHIAQW ESARLEAEAR LSTESSLFNP VPVGGSDSDY FLRIWNSEVG ESFRKFSMGE  480
KTLCQNSVSQ ASSSTKCGSI SPVTTEIGTI LAVVALGTGT KCIGRSLLSQ RGDVVNDSHA  540
EIIARRALLR FFYAQIQGLA HFHSKQNYID GSSKLQGCDI NDLPFQLDPD SLGQVKYTLK  600
PGWQLHLFIS QPPCGFASLS CLLFPPNCNP SRERDSQPNM GDLNNSISEP WEVLVKNNGV  660
ASQHIGSVQR KPGRGDTTSS VSCSDKIARW NVVGVQGALL SYFLLPVYLS SVTVGGSPNS  720
PEEFCLEDCL RIALYDRIQP LSNEITSPFQ VNQPLFWAAP IPPKEFQHSE TALSTLTCGY  780
SICWNRSGLH EVILGTTGRK QGTSAKGALF PSTESSLCKK RLLEIFLSLE HECQTEYPAN  840
EISYRALKQR AQEYMTMSKL FKGSQPFSNW LLKPVDTEAF SIFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6d06_A	3e-31	513	882	70	401	Double-stranded RNA-specific editase 1
6d06_D	3e-31	513	882	70	401	Double-stranded RNA-specific editase 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814849.1	0.0	PREDICTED: tRNA-specific adenosine deaminase 1 isoform X1
Refseq	XP_018814850.1	0.0	PREDICTED: tRNA-specific adenosine deaminase 1 isoform X1
TrEMBL	A0A2I4E625	0.0	A0A2I4E625_JUGRE; tRNA-specific adenosine deaminase 1 isoform X1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-62	myb domain protein 17