PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024618-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 290aa    MW: 32566.9 Da    PI: 5.6227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024618-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-164796255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L ++++Y+++Lq
  WALNUT_00024618-RA 47 RSKHSVTEQRRRSKINERFQILRDLVPHS----DQKRDTASFLLEVIDYVQYLQ 96
                        899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1844117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-2244117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.244595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-1547100No hitNo description
PfamPF000102.6E-134796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1251101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRTGKGNQED EYEEEEFSSK KDGTSSTDKD NTSNKDAKDN DKATAIRSKH SVTEQRRRSK  60
INERFQILRD LVPHSDQKRD TASFLLEVID YVQYLQEKLQ KYEGSCQGWS SEPTKLMPWR  120
NSHWRVQSFV GHPQTNGSSL GSTFPGKFDE NNVSMTPTML TSTQKARESD PSRDINCKPI  180
DRLPEFANEG SPLPMALQAN MPPSVRGDGV LALPLQGPVS DAHTTEFPMI CETLNQQDLI  240
IEGGTISISS VYSHGWDHEN PPSGHQEMAH LRDAGSSRED SDQAQKRLKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860393.10.0PREDICTED: transcription factor BIM2-like
SwissprotQ9CAA46e-90BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2I4HW800.0A0A2I4HW80_JUGRE; transcription factor BIM2-like
STRINGEMJ237641e-123(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-81BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]