PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024542-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 353aa    MW: 39443.4 Da    PI: 7.8308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024542-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l+ +++q+G g+W+  +r+ g+ R++k+c++rw++yl
  WALNUT_00024542-RA 14 RGPWTPEEDKKLLAYIQQYGCGSWRCLPRKAGLQRCGKSCRLRWNNYL 61
                        89*********************************************7 PP
2Myb_DNA-binding45.81.4e-1467112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++  Ed  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  WALNUT_00024542-RA  67 RGQFSLLEDRTIIQLHALLGSR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                         7899999***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129414.425961IPR017930Myb domain
SuperFamilySSF466892.84E-2912108IPR009057Homeodomain-like
SMARTSM007172.2E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001671.31E-101661No hitNo description
PROSITE profilePS5129423.16362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2465116IPR009057Homeodomain-like
SMARTSM007173.1E-1466114IPR001005SANT/Myb domain
PfamPF002496.1E-1467112IPR001005SANT/Myb domain
CDDcd001673.02E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRTPCCNAD GMNRGPWTPE EDKKLLAYIQ QYGCGSWRCL PRKAGLQRCG KSCRLRWNNY  60
LRPDIKRGQF SLLEDRTIIQ LHALLGSRWS AIATHLPKRT DNEIKNYWNT HLKKRLAMMG  120
IDPVTHKPKG TVLESANGDP KSASNLSHMA QWENTRLEAE ERLVRESQLC YQLYDLPPGF  180
SSGRSSAAAS GMLLNETTTS KLAPPRCLDV LKVWESVMLE SMLAAGNDHH GGVDSGCVFG  240
LGMGGHSDIA SEISALGFLE INARDHQTYL NEFNEISTMQ LHKMNLATGD VGYRRHQYHH  300
HDHDGVFNNM PHHILSANSL ITGSAGSGSS NAVEERARNE TNYWHDIINT GSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812743.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A2I4E0230.0A0A2I4E023_JUGRE; myb-related protein 330-like
STRINGXP_010093592.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-92myb domain protein 16