PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024529-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 348aa    MW: 39045.9 Da    PI: 6.676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024529-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11175221455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+ Y+k+Lq
  WALNUT_00024529-RA 175 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAITYVKELQ 221
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.90E-12176224No hitNo description
SMARTSM003533.9E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEISSTKWLS ELEMDDFEYI QQCDMNTLDD GFATAMRENF QQSLSSESHS SYPAFNTKTT  60
ITTNTFSNSS ISQNSFERPA KQTKTNNWNS GIAEHGSIPK PSSSSHILSF WNSNSLPADS  120
KQFFRTLDSS LKPKDEVVCQ VNKHVHLISK GSAENQDHGT QKTNSMTRTP SNAQDHIMAE  180
RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAITYVKEL QARVNLLEEQ TKKRTVESFV  240
YVKKAQLSAD DDTSSCDENF HGRSDEAALP EIEARISEKD VLIRIHCEKN KGAVVRTLCE  300
IEKLHLSVVN SSVLPFGNSI LDMTVIARMD NEFDLTAKDI VKCLRLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13175230863Transcription factor MYC2
5gnj_B1e-13175230863Transcription factor MYC2
5gnj_E1e-13175230863Transcription factor MYC2
5gnj_F1e-13175230863Transcription factor MYC2
5gnj_G1e-13175230863Transcription factor MYC2
5gnj_I1e-13175230863Transcription factor MYC2
5gnj_M1e-13175230863Transcription factor MYC2
5gnj_N1e-13175230863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERKRRE
2180185RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813766.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2I4E2Y80.0A0A2I4E2Y8_JUGRE; transcription factor bHLH25-like
STRINGXP_008236876.11e-138(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-73bHLH family protein