PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024384-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 360aa    MW: 40961 Da    PI: 6.3358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024384-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.26.9e-3396195199
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         f+k ltpsdv+k++rlv+pk++ae++   gg+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++++
  WALNUT_00024384-RA  96 FEKPLTPSDVGKLNRLVIPKQHAERYfplGGD--SGLLLSFEDESGKYWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHRTN 184
                         99*************************99888..5679************************************************98889 PP

                         EE..EEEEE-S CS
                  B3  89 efelvvkvfrk 99 
                         +++l+++++r+
  WALNUT_00024384-RA 185 GERLFIGWRRR 195
                         999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-4187202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-3191195IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-2994186No hitNo description
PfamPF023626.5E-3096195IPR003340B3 DNA binding domain
SMARTSM010198.1E-2696196IPR003340B3 DNA binding domain
PROSITE profilePS5086314.59396195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEPIPNHPPS SSKTDPSWSP ELYQQQRAWL NFHNFQEPTS MFRHPINTPI DFNLNHDDND  60
DDFDDQIPET PAHQKAILEQ EEEPQPADES EKEPMFEKPL TPSDVGKLNR LVIPKQHAER  120
YFPLGGDSGL LLSFEDESGK YWRFRYSYWN SSQSYVLTKG WSRYVKEKRL DAGDVVLFER  180
HRTNGERLFI GWRRRVAAAH DSGGDNGTLM AAQHSNSSGS GSGWTRVFYS AHPYPTHHHH  240
PLPYQPDCLH AGSPNQSQTT PTGSSRVLRL FGVNLECQPE ESEPCTPDGS SSSSQGPAYQ  300
HHFYNHHHQP AANYSHSHPH STHMVMCGNI VTGYHFLPRC QPDEKSPRIK ICGCDALELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-46901952113B3 domain-containing transcription factor NGA1
5os9_B1e-46901952113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820040.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ29e-67Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A2I4EKW40.0A0A2I4EKW4_JUGRE; B3 domain-containing protein At2g36080-like
STRINGVIT_08s0007g02810.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-68B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]