PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024318-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 306aa    MW: 33402.3 Da    PI: 7.792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024318-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W+ eEd  l+ +++ +G+g +W + +r+ g++R++k+c++rw++yl
  WALNUT_00024318-RA 14 RGPWSLEEDATLKSYIQNHGTGgNWMALPRKAGLRRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding475.9e-1569111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd ++  ++ q+G++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00024318-RA  69 GGFTEEEDNIICTLHSQMGSR-WSVIAAQLP-GRTDNEVKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.568962IPR017930Myb domain
SuperFamilySSF466892.89E-2712109IPR009057Homeodomain-like
SMARTSM007174.0E-101364IPR001005SANT/Myb domain
PfamPF002491.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231569IPR009057Homeodomain-like
CDDcd001672.90E-71662No hitNo description
PROSITE profilePS5129423.06263117IPR017930Myb domain
SMARTSM007172.4E-1467115IPR001005SANT/Myb domain
PfamPF002492.5E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2570116IPR009057Homeodomain-like
CDDcd001672.81E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRAPCCDKD SVKRGPWSLE EDATLKSYIQ NHGTGGNWMA LPRKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLHSQMGSRW SVIAAQLPGR TDNEVKNYWN TKLKKKKQLL  120
TGNTSNATTK SDKMIYSHDH MSFVSKAEPH SFVTSASSQP QNLTDISFGL SSASFQGSLG  180
NSDPVQLYCP GLMDVSEFGA TSKNSSTSTL IVSLSQDSSS NISHSSSFAL DKFVSLAGNG  240
YVDDSGVLTG WGFGSSRPYG LDNSLIFPEK LDGGFGPTCY PNMGDFTFTD IKSQGVVLDP  300
NVINQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834527.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2I4FSA30.0A0A2I4FSA3_JUGRE; transcription factor RAX2-like
STRINGEOY298404e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-61myb domain protein 84