PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024281-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26282.8 Da PI: 6.7041 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.6 | 6e-56 | 49 | 152 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql+sfw++q iekatdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi WALNUT_00024281-RA 49 QLQSFWANQyqeIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 139 89******99999****************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdflvdivpr++l WALNUT_00024281-RA 140 FDFLVDIVPREDL 152 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.05E-33 | 42 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-21 | 71 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.3E-38 | 72 | 149 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MTGAPSHGSV VTSVGAIQST SQPAGAQLPQ HQLAYQHIHQ QQQQQLQQQL QSFWANQYQE 60 IEKATDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTIPVGGH ADALPYCYMP 180 PHHAPHHAPQ VGTPGMIMGK PVMDPAMYAQ QSHPYMVPQM WPQASEQQQS PSDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-62 | 57 | 149 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018843712.1 | 1e-175 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 1e-85 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2I4GIJ1 | 1e-174 | A0A2I4GIJ1_JUGRE; nuclear transcription factor Y subunit C-3-like | ||||
STRING | XP_008246497.1 | 1e-138 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 3e-83 | nuclear factor Y, subunit C9 |