PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024260-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9538.66 Da PI: 9.5859 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.9e-11 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+e +++ +a +++ ++ +W +a+ +g g+t++++k ++ WALNUT_00024260-RA 14 SWTAEQNKRFEKALALYDKDtpdRWQNVAKAVG-GKTAEEVKRHY 57 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-6 | 6 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.577 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-9 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.73E-14 | 13 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.54E-8 | 14 | 61 | No hit | No description |
Pfam | PF00249 | 4.5E-9 | 14 | 57 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MASSSLNKQN SSSSWTAEQN KRFEKALALY DKDTPDRWQN VAKAVGGKTA EEVKRHYEIL 60 LEDLRHIESG RIPIPKYRSS GQSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-33 | 1 | 81 | 1 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537885.2 | 7e-44 | protein RADIALIS-like 4 | ||||
Refseq | XP_028186442.1 | 7e-44 | protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 3e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A445I0A3 | 2e-42 | A0A445I0A3_GLYSO; Protein RADIALIS-like 6 | ||||
TrEMBL | I1LJC8 | 2e-42 | I1LJC8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G12460.1 | 3e-43 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 8e-36 | RAD-like 6 |