PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024259-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 440aa MW: 48654.7 Da PI: 5.9747 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 248 | 295 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq WALNUT_00024259-RA 248 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 295 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.05E-10 | 242 | 299 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 242 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.624 | 244 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-17 | 244 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 248 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 250 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MNRALPEMLH CLSGPGNGTD MTVLERQRTR VKWQHQEQQN YFGGSEFVGV FLEPSQAGQV 60 GDFQDLLGGG GGSVLRDVMT RSVKPDPGLE NGWPELGRYE LPDLGFGSAV LMNGSPTGFE 120 MNPTITRTSS CPPAEAQVAP EAKGKVSEPT EKMSSAVGRE SFKKRKADKV QNTKVVSEDD 180 AKDKRSKVCA EEGESKITTE QTRTKNTSTH TNNRETSADT SRENSKASEV QKPDYIHVRA 240 RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AGMLDEIINY VQSLQRQVEF 300 LSMKLATVNP RLDFNIEDLF AKEIFPACSA NFPTIGSSSE MTNPAYLQFN PVQQMVACCG 360 LEMGVNTPDL MALRRTISAP VSLPETYFDT PCFTQLHPPL TWDADLQNLF NLDSHQGRSI 420 SFPSQPFTGS NEASNLKMEI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018851563.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
TrEMBL | A0A2I4H5X9 | 0.0 | A0A2I4H5X9_JUGRE; transcription factor bHLH63-like | ||||
STRING | XP_008236908.1 | 0.0 | (Prunus mume) | ||||
STRING | XP_010088933.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 2e-66 | cryptochrome-interacting basic-helix-loop-helix 1 |