PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024190-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26432.2 Da PI: 10.3429 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.9e-21 | 19 | 64 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k qvtfskRr g++KKA+EL++LC++e+a+++fs+ k++ + WALNUT_00024190-RA 19 PKKNHLQVTFSKRRSGLFKKASELCTLCGVEIAILVFSPAEKVFSF 64 5667789***********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.493 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-26 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.34E-32 | 9 | 78 | No hit | No description |
PRINTS | PR00404 | 2.0E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-23 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVKKKPSMGR QKIPIAKIPK KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AILVFSPAEK 60 VFSFGHPDVE SILDRYLTRN LPPAPDQSGA QQLVEAHRNA NVRDLNARLT QVLNQLEAEK 120 KLGESLHQMR KASQKQFWWE APINELGLHE LEQLKVSMEE LKKNVAKQTN KISSITGASS 180 THYSSPALFG VLNHDHTGTG SAGFFESKPT GFINNASTST MPNHRVYNFG YGHHGLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 8 | 82 | 1 | 75 | MEF2C |
5f28_B | 1e-16 | 8 | 82 | 1 | 75 | MEF2C |
5f28_C | 1e-16 | 8 | 82 | 1 | 75 | MEF2C |
5f28_D | 1e-16 | 8 | 82 | 1 | 75 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826894.1 | 1e-178 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_018860591.1 | 1e-178 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2I4F5H9 | 1e-176 | A0A2I4F5H9_JUGRE; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_004511261.1 | 1e-90 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-60 | AGAMOUS-like 62 |