PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024160-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LSD
Protein Properties Length: 146aa    MW: 15241.9 Da    PI: 7.7221
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024160-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD133.37.9e-112852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gC +lL YP GA sV+Ca+C++V
  WALNUT_00024160-RA 28 CSGCLNLLLYPVGAMSVCCAVCHAV 52
                        ************************9 PP
2zf-LSD144.92e-146791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL++ rGA+sV+C++C+tV
  WALNUT_00024160-RA 67 CGGCHTLLMFIRGATSVQCSCCHTV 91
                        ************************9 PP
3zf-LSD131.23.7e-10105129125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         C +Cr lL+Y +GA+ V+Ca+C++V
  WALNUT_00024160-RA 105 CCNCRMLLMYQYGARTVKCAVCNFV 129
                         889********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.4E-102555IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-82852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.7E-146493IPR005735Zinc finger, LSD1-type
PfamPF069436.2E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-9102132IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-9105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAN GAQSHLVCSG CLNLLLYPVG AMSVCCAVCH AVTAVPPPGT  60
EMAQLVCGGC HTLLMFIRGA TSVQCSCCHT VNLAMEANQV AHVNCCNCRM LLMYQYGART  120
VKCAVCNFVT SVGASASTSA EQKFNN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806915.11e-101PREDICTED: protein LOL1-like
SwissprotQ93ZB19e-75LOL1_ARATH; Protein LOL1
TrEMBLA0A2I4DIE21e-100A0A2I4DIE2_JUGRE; protein LOL1-like
STRINGcassava4.1_018557m6e-88(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-54lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]