PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024135-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28530.8 Da    PI: 10.4307
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024135-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk++rqvtfskRr+g+lKKA+E+SvLCd+e a+i+fs++gkl+e+ss
  WALNUT_00024135-RA  9 KRIENKIRRQVTFSKRRTGLLKKAHEISVLCDVELALIVFSTKGKLFEFSS 59
                        79***********************************************96 PP
2K-box81.61.8e-279617719100
               K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          ++ +L +++e Lqr++ ++lG dL++Ls++eL+++eqqL+ +lk+iR++Kn+l+ e+i elqkkek+lqe+nk L k+l+e
  WALNUT_00024135-RA  96 DQVPRLFARNEVLQRNISNFLGGDLDPLSIRELRNIEQQLDLGLKRIRTRKNKLIDESIMELQKKEKALQEQNKLLVKQLKE 177
                         4677999***********************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-32281IPR002100Transcription factor, MADS-box
CDDcd002651.43E-40276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.05791181IPR002487Transcription factor, K-box
PfamPF014865.8E-2196175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVQLKR IENKIRRQVT FSKRRTGLLK KAHEISVLCD VELALIVFST KGKLFEFSSN  60
SSMERILERY ERYSHAERPL VATHDSQPQG SCRSLDQVPR LFARNEVLQR NISNFLGGDL  120
DPLSIRELRN IEQQLDLGLK RIRTRKNKLI DESIMELQKK EKALQEQNKL LVKQLKENEA  180
LSEHAHGREQ PPPLTLALLP LTIGGTFQAT TMDEDAGAQT QPRSTTTLMP PWMLHHVMNG  240
YRDSSRATP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q6e-21174173Myocyte-specific enhancer factor 2B
1tqe_R6e-21174173Myocyte-specific enhancer factor 2B
1tqe_S6e-21174173Myocyte-specific enhancer factor 2B
6byy_A7e-21174173MEF2 CHIMERA
6byy_B7e-21174173MEF2 CHIMERA
6byy_C7e-21174173MEF2 CHIMERA
6byy_D7e-21174173MEF2 CHIMERA
6bz1_A7e-21174173MEF2 CHIMERA
6bz1_B7e-21174173MEF2 CHIMERA
6bz1_C7e-21174173MEF2 CHIMERA
6bz1_D7e-21174173MEF2 CHIMERA
6c9l_A6e-21174173Myocyte-specific enhancer factor 2B
6c9l_B6e-21174173Myocyte-specific enhancer factor 2B
6c9l_C6e-21174173Myocyte-specific enhancer factor 2B
6c9l_D6e-21174173Myocyte-specific enhancer factor 2B
6c9l_E6e-21174173Myocyte-specific enhancer factor 2B
6c9l_F6e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846950.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN64e-92FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2I4GSS60.0A0A2I4GSS6_JUGRE; truncated transcription factor CAULIFLOWER A-like
STRINGXP_004304203.18e-96(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]